View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_40 (Length: 394)
Name: NF1305_high_40
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_40 |
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Alignment Details
Target: chr4 (Bit Score: 345; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 29 - 381
Target Start/End: Complemental strand, 30897676 - 30897324
Alignment:
| Q |
29 |
accactcatgatgaactctgatctgatcatagcggtagtaattcgtctctgagctagtggtgaaatacacccaatagcaatggccctcttcagcagtgat |
128 |
Q |
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| T |
30897676 |
accactcatgatgaactctgatctgatcatagcggtagtaattcgtctctgagctagtgctgaaatacacccaatagcaatggccctcttcagcagtgat |
30897577 |
T |
|
| Q |
129 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacacgtggt |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897576 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacacgtggt |
30897477 |
T |
|
| Q |
229 |
ggtgttggacgtagctcatatggataaatggtctctacaagaggtccagacttgtcctcaagcaaaagattcttgtattgaaccatgtattgtccatttt |
328 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897476 |
ggtgttggacgtagctcatatggataaatggtctctacaagaggtccagacttgtcctcaagcaaaagattcttgtattgaaccatgtattgtccatttt |
30897377 |
T |
|
| Q |
329 |
ggaggcgtgaaacaactctggctttgtagtacgaaccgaaaaacccctcttct |
381 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30897376 |
ggagacgtgaaacaactctggctttgtagtacgaaccgaaaaacccctcttct |
30897324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 145 - 227
Target Start/End: Original strand, 30962905 - 30962987
Alignment:
| Q |
145 |
atttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacacgtgg |
227 |
Q |
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| T |
30962905 |
attttccctacccaccaaccatctttataaaaaacatcaactttttgattgagttgaaacttagaaggatttcgaacacgtgg |
30962987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 124 - 326
Target Start/End: Original strand, 5963476 - 5963678
Alignment:
| Q |
124 |
gtgatgatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaattcatgaggattacgaacac |
223 |
Q |
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|
||||||||||||||||| ||||||||||||| |||||||||||| || | |||||||||||||| |||||||||||||| ||| ||||| ||||||||| |
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| T |
5963476 |
gtgatgatcttctcactagtgatttgccctaaccaccaaccatcgttgtcaaaagcatcaactttttgattgagttgaaactcacgaggactacgaacac |
5963575 |
T |
|
| Q |
224 |
gtggtggtgttggacgtagctcatatggataaatggtctctacaagaggtccagacttgtcctcaagcaaaagattcttgtattgaaccatgtattgtcc |
323 |
Q |
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|||| ||| |||||| ||||||||||||| || |||||||| ||| ||| |||||| || || ||||||| || ||||| |||||| |||||||| |
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| T |
5963576 |
gtggcggtaatggacgaagctcatatggatgaacggtctctaagagaagtctagacttatcatcttgcaaaaggtttttgtaacgaaccaaatattgtcc |
5963675 |
T |
|
| Q |
324 |
att |
326 |
Q |
| |
|
||| |
|
|
| T |
5963676 |
att |
5963678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 38782762 - 38782652
Alignment:
| Q |
129 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagttgaaa-ttcatgaggattacgaacacgtgg |
227 |
Q |
| |
|
||||||||| || | ||||| ||||||||||||||||| |||| || |||||||||| |||||||||| ||| |||| ||||||||||||| |||| |
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| T |
38782762 |
gatcttctcgctagcgattttacctacccaccaaccatcgttatcaaatacatcaactttttgattgagtttaaacttca-aaggattacgaacatgtgg |
38782664 |
T |
|
| Q |
228 |
tggtgttggacg |
239 |
Q |
| |
|
|||| ||||||| |
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|
| T |
38782663 |
tggtattggacg |
38782652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 38788934 - 38788864
Alignment:
| Q |
129 |
gatcttctcactggtgatttgccctacccaccaaccatcattatggaaagcatcaactttctgattgagtt |
199 |
Q |
| |
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||||||||| || | ||||| |||||||||||||||||| |||| || ||||||||||||||||||||| |
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| T |
38788934 |
gatcttctcgctagcgatttcccctacccaccaaccatcgttatcaaacacatcaactttctgattgagtt |
38788864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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