View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_48 (Length: 354)
Name: NF1305_high_48
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_48 |
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Alignment Details
Target: chr6 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 30902253 - 30902556
Alignment:
| Q |
9 |
caataatatcatcgatgataacgcagattcactagttcatctagacaaagacataatatgataataagataagaa---caatgagtttttgattttcnnn |
105 |
Q |
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|||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||| ||| |||||||||| |
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| T |
30902253 |
caataaaatcatcgatgataacgcagattcactggttcatctagacaaaggcataatatgataataagataagaagaacaataagtgtttgattttcaaa |
30902352 |
T |
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| Q |
106 |
nnnncaagtaaataatattctgagttacatttaaatcaagacagttagtatctaattgcttcttaaataggtgtaagtgttatgatatatcaatgaagta |
205 |
Q |
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|||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30902353 |
aaaacaagtaaataatattctgagttgcttttaaatcaagacagtcagtatctaattgcttcttaaataggtgtaagtgttatgatatatgaatgaagta |
30902452 |
T |
|
| Q |
206 |
agtgaaaggaactcaaatttccattagtaaactagtgaggaattacaatataaattggaaggaattctagtatggaataggtaccatttcttggtttaat |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30902453 |
agtgaaaggaactcaaatttccattagtaaactagtgaggaattacaatagaaattggaaggaattctagtatgtaataggtaccatttcttggtttaat |
30902552 |
T |
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| Q |
306 |
tcag |
309 |
Q |
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|||| |
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| T |
30902553 |
tcag |
30902556 |
T |
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