View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_49 (Length: 352)
Name: NF1305_high_49
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_49 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 82 - 352
Target Start/End: Complemental strand, 48536115 - 48535844
Alignment:
| Q |
82 |
gagcaggttgttttctctgacccatacaaagtttctgagtataatcgttggacttcacctaatcttgaccgtgatgctgaggctgttcgggaagacaatc |
181 |
Q |
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| T |
48536115 |
gagcaggttgttttctctgacccatataaagtttctgagtataatcgttggacttcacctaatcttgaccgtgatgctgaggctgttcgggaagacaatc |
48536016 |
T |
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| Q |
182 |
tactgaagcttgaagttgctgagctaaaatcaaagtattatatatgtctcacactctcac-tttcttcttcttttaatgcagtagttttgttgtttgggt |
280 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
48536015 |
tactaaagcttgaagttgctgagctaaaatcaaagtattatatatgtctcacactctcactttttttcttcttttaatgcagtagttttgttgtttgggt |
48535916 |
T |
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| Q |
281 |
ttttgttgatgaaaatttatgttcattcaggttctgtgagagggctcaggcactaatacatggagatctaca |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48535915 |
ttttgttgatgaaaatttatgttcattcaggttctgtgagagggctcaggcactaatacatggagatctaca |
48535844 |
T |
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