View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_5 (Length: 691)
Name: NF1305_high_5
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 270; Significance: 1e-150; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 10 - 351
Target Start/End: Complemental strand, 9383695 - 9383354
Alignment:
| Q |
10 |
aagaatattgttgtgagaagtcagccctttaaataaacatttcttgtatctcgaatgattgattagtctttaacttcgaccgaaggatactttagacaac |
109 |
Q |
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| T |
9383695 |
aagaatattgttgtgagaagtcagctccttaaatagacattttttgtatctcaaatgattgattagtctttaacttcaatcgaaggatactttacacaac |
9383596 |
T |
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| Q |
110 |
aaagaaaaaatctaataaattttgtcacatggtcatactttcaccttgtatcaattaattgtaactcaagtttggatttagaatttctcactctaaagat |
209 |
Q |
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| T |
9383595 |
aacgaaaaaatctaataaattttgtcacatggtcatactttcaccttgtatcaattaattgtaactcaagtttgaatttacaatttctcagtttaaagat |
9383496 |
T |
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| Q |
210 |
tatacataaatttcttcaataaatttggtgtgtttttccctcaagtattggtagtttgggtaatgaaaacttttctttgatgaagaatagttaaacttag |
309 |
Q |
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| T |
9383495 |
tatacataaatttcttcaataaatttggtgtgtttttccctcaagtattggtagtttgggtaatgaaaacttttcttccatgaagaatagttaaacttaa |
9383396 |
T |
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| Q |
310 |
gcttaagccaaagatgaagattggcttttcggttagcatttt |
351 |
Q |
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| T |
9383395 |
gcttaagccaaagatgaagattgacatttcggttagcatttt |
9383354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 452 - 635
Target Start/End: Complemental strand, 9382520 - 9382339
Alignment:
| Q |
452 |
agagatatgtttgtgcttataacacaaaaatcatcgtcattttcacacgatcttaaagtttatttttacgaggttatagtgnnnnnnngttgtttatgca |
551 |
Q |
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| T |
9382520 |
agagatatgtttgtgcttataacacaaaaatcatcgtcattttcacacgatcttaaagtttatttttactaggttatagtgttttttt-ttgtttatgca |
9382422 |
T |
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| Q |
552 |
aaatgttagttaactattatgttactagnnnnnnnnnctcatttgtatccaatgcctccaatttcttatcttttaactcaatcc |
635 |
Q |
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| T |
9382421 |
aaatgttagttaactattatgttactag-ttttttttctcatttgtatccaaagcctccaatttcttatcttttaactcaatcc |
9382339 |
T |
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