View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_52 (Length: 336)
Name: NF1305_high_52
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_52 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 5e-90; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 883726 - 883523
Alignment:
| Q |
1 |
ttgtttgataccaacacagcacttacacatataatcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgtatgtg |
100 |
Q |
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| T |
883726 |
ttgtttgataccaatacaacactgacaaatgtagtcacattgaattatgtaactttttaaaattattatttgtatcgattgtctaatgttcgtgtatgtg |
883627 |
T |
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| Q |
101 |
ttcctgcttcatatcacttgttgatttgaatgagttatcagatgtttgggtttgaggaagttgagacccctgactttggagagttaaaggttatatggtt |
200 |
Q |
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||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
883626 |
ttcatgcttcatatcacttgttgatttgaacgagttatcagatgtttgggtttgaggaagttgagacccctgactttggagagttaaagattatatggtt |
883527 |
T |
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| Q |
201 |
gcgc |
204 |
Q |
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|||| |
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| T |
883526 |
gcgc |
883523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 228 - 334
Target Start/End: Complemental strand, 883505 - 883399
Alignment:
| Q |
228 |
acttatccatctcatacaacgtagcaacggcgagctggctccatcatcctccattcctgttaaagacccctctcatatccgcttaggccatcatctctgc |
327 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
883505 |
acttatccatctcatacaacatagcaacggcgagctggctccatcatcctccattcctgttaaagacccctctcatatccgcttaggccatcatctttgc |
883406 |
T |
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| Q |
328 |
tcctcca |
334 |
Q |
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| ||||| |
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| T |
883405 |
ttctcca |
883399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 38749571 - 38749615
Alignment:
| Q |
25 |
acacatataatcacattgaattatgtaactttttaaaattattat |
69 |
Q |
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| T |
38749571 |
acacatataattacattgaattatgtcattttttcaaattattat |
38749615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 99944 - 99900
Alignment:
| Q |
25 |
acacatataatcacattgaattatgtaactttttaaaattattat |
69 |
Q |
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| T |
99944 |
acacatataattacattgaattatgttattttctaaaattattat |
99900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 3677835 - 3677783
Alignment:
| Q |
27 |
acatataatcacattgaattatgtaactttttaaaattattatttgtatcgat |
79 |
Q |
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| T |
3677835 |
acatataattacatagaattatgtgattttttaaaattattaattgtgtcgat |
3677783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 18013077 - 18013125
Alignment:
| Q |
20 |
cacttacacatataatcacattgaattatgtaactttttaaaattatta |
68 |
Q |
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|||| ||||||||||| ||| |||||||||||| ||||| ||||||||| |
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| T |
18013077 |
cactgacacatataattacactgaattatgtaatttttttaaattatta |
18013125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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