View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_high_57 (Length: 321)
Name: NF1305_high_57
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_57 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 126 - 292
Target Start/End: Complemental strand, 23574089 - 23573922
Alignment:
| Q |
126 |
cttttagtgtgccatgttgtatataataattcatccatgtg-tacaccattagttttgannnnnnnnnaacaaaaacttaa-cagaaagaatatttgcaa |
223 |
Q |
| |
|
||||||||||||||||||| || |||||||| |||||| || ||||||||||||||||| ||||||||||||| ||||| |||||||||||| |
|
|
| T |
23574089 |
cttttagtgtgccatgttgcatgtaataattgatccatatgatacaccattagttttgattttttt--aacaaaaacttaaacagaaggaatatttgcaa |
23573992 |
T |
|
| Q |
224 |
gatcattacaaagtgcagaactaatgacatatttaagctttta-ttacaacacttgacaatttcgattcc |
292 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
23573991 |
gatcattacaaagtgcaggactaatgacatatttaagcttttatttacaacacctgacaatttcgattcc |
23573922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 41033962 - 41033992
Alignment:
| Q |
1 |
aggaaatgacttatgcaccataaccactccc |
31 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
41033962 |
aggaaatgacttatgcaccataaccactccc |
41033992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University