View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_high_63 (Length: 308)
Name: NF1305_high_63
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_63 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 40865694 - 40865568
Alignment:
| Q |
48 |
caccacagagggaagagacgacaaagacatggcaatgcatgaattgtgacaacgggaaaaacaaagtgcaacttataacaataccaagctacaaatcaag |
147 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40865694 |
caccacaaagggaagagacgacaaagacatggcaatgcatgaattgtgacaacggaaaaaacaaagtgcaacttataacaataccaagctacaaatcaag |
40865595 |
T |
|
| Q |
148 |
gtgcagaataata-atatatatttata |
173 |
Q |
| |
|
||||||||||||| |||||||| |||| |
|
|
| T |
40865594 |
gtgcagaataatatatatatatatata |
40865568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 40865508 - 40865439
Alignment:
| Q |
203 |
aggcaaccatacaaaaaataagagacactgataagtggctagaacctattaagcatgggcagatttaccg |
272 |
Q |
| |
|
|||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40865508 |
aggcaaccatacaaaaaataagagacgcagacaagtggctagaacctattaagcatgggcagatttaccg |
40865439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University