View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_65 (Length: 302)
Name: NF1305_high_65
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_65 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 16 - 241
Target Start/End: Original strand, 39786686 - 39786911
Alignment:
| Q |
16 |
acctgtggtcaagtagcctatttatattagatttggatgtaatcaatatatttttatattgcaactaatcaatactcttatatttggagaatcaccatta |
115 |
Q |
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| T |
39786686 |
acctgtggtcaagtagcctatttatattagatttggatgtaatcaatatatttttatattgcaactaatcaatactcttagatttggagaatcaccatta |
39786785 |
T |
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| Q |
116 |
actataagtagcattcaaacaagaaaaatgttaacttgtgtcgttgaataagttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaat |
215 |
Q |
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| T |
39786786 |
actataagtagcattcaaacaaaaaaaatgttaacttgtatcgttgaataagttaagaaattaaatgtaaaagtgatatttagaaaatagtgcattgaat |
39786885 |
T |
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| Q |
216 |
atcttaaaattttcaaaaactacatg |
241 |
Q |
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| T |
39786886 |
atcttaaaaatttcaaaagctacatg |
39786911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 154 - 273
Target Start/End: Original strand, 39786910 - 39787029
Alignment:
| Q |
154 |
tgtcgttgaataagttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaatatcttaaaattttcaaaaactacatgcatgtttgtcta |
253 |
Q |
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| T |
39786910 |
tgtcgttgaataagttaagaaactaaatgtaaaagtaatatttagaaaatagtgcattgaatgtcttaaaaatttcaaaagctacatgaatgttcgtcta |
39787009 |
T |
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| Q |
254 |
ttctaagttccttaacttat |
273 |
Q |
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| T |
39787010 |
ttctaagctccttaacttat |
39787029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 233
Target Start/End: Original strand, 37209822 - 37209888
Alignment:
| Q |
167 |
gttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaatatcttaaaattttcaaaa |
233 |
Q |
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| T |
37209822 |
gttaagaaaccaaatgtagaagttttttcttggaaattgtgcatttaatatcttaaaagtttcaaaa |
37209888 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 50170605 - 50170534
Alignment:
| Q |
163 |
ataagttaagaaaccaaatgtaaaagttatatt-ttgaaaatggtgcattgaatatcttaaaattttcaaaa |
233 |
Q |
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| T |
50170605 |
ataagttaagaaaccaaatgtagaagtttttttcttggaaattgtgcattcaatgtcttaaaaatttcaaaa |
50170534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 140 - 233
Target Start/End: Original strand, 8059900 - 8059996
Alignment:
| Q |
140 |
aaaatgttaacttgtgtcgttga---ataagttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaatatcttaaaattttcaaaa |
233 |
Q |
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| T |
8059900 |
aaaatgttaacttgtgcccttgaggcataagttaagaaaccaaatgtagaagtttttgcttggaaattgtgcattcaatgtcttaaaagtctcaaaa |
8059996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Original strand, 22874219 - 22874289
Alignment:
| Q |
163 |
ataagttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaatatcttaaaattttcaaaa |
233 |
Q |
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| T |
22874219 |
ataagttaagaagctatatgtagaagttttattttgaaaattgtgcattcaattttttaaaaatttcaaaa |
22874289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 38870023 - 38869953
Alignment:
| Q |
163 |
ataagttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaatatcttaaaattttcaaaa |
233 |
Q |
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| T |
38870023 |
ataaattaagaaactaaatgtaaaagttttttcttgaaacttgtgcattcaatatcttaaaaattgcaaaa |
38869953 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 163 - 233
Target Start/End: Complemental strand, 30617695 - 30617625
Alignment:
| Q |
163 |
ataagttaagaaaccaaatgtaaaagttatattttgaaaatggtgcattgaatatcttaaaattttcaaaa |
233 |
Q |
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| T |
30617695 |
ataagttaagaaaccaaatatagaagttttttcttggaaattgtgcattcaatctcttaaaagtttcaaaa |
30617625 |
T |
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