View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_high_67 (Length: 298)
Name: NF1305_high_67
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_67 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 30356206 - 30356446
Alignment:
| Q |
1 |
tatgacaaggcaatcacctctccatttttgttctcaagaagggggatattaggaaaagaccttggattaattggaataccattatctacctaggcaagga |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30356206 |
tatgacaaggcaatcacctctccatttttgttctcaagaagggggatattaggaaaagaccttggattaattggaataccattatctacctaggcaagga |
30356305 |
T |
|
| Q |
101 |
gaacatatgtttaggggtgtacaaattgcgggaatttattttagctttgttaggaagatgatgttggagggtttgtgttgaacatgatagtttgtgactg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30356306 |
gaacatatgtttaggggtgtacaaattgcgggaatttaatttagctttgttaggaagatgacgttggagggtttgtgttgaacatgatagtttgtgactg |
30356405 |
T |
|
| Q |
201 |
aaggagggaggatgagggaggctgggcgtggtgagtctgtg |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30356406 |
aaggagggaggatgagggaggctgggcgtggtgagtctgtg |
30356446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University