View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_high_7 (Length: 664)
Name: NF1305_high_7
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 371; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 8 - 527
Target Start/End: Complemental strand, 42470361 - 42469844
Alignment:
| Q |
8 |
gagcagagatagtggtccaatgttgaattcctcttcctggttcattatcactgcctgtaagagttcacaagataaagaattaaacaaccatccaacaata |
107 |
Q |
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| T |
42470361 |
gagcacagatagtggtccaatgttgaattcctcttcctggttcattatcactgcctgtaagagttcaca---taaagaattaaacaaccatccaacaata |
42470265 |
T |
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| Q |
108 |
gtgtagtaggaaacaattgtaatgcnnnnnnnnnnnnnnnnnggtcattaaagaatgaataacatacatcttccattggcttgagaagaaaaaacaaaga |
207 |
Q |
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| T |
42470264 |
atgtagtaggaaacaattgtaatgcaaaaaattaataaaaaagatcattaaagaatgaataacatacatcttccattggcttgagaagaaaaaacaaagc |
42470165 |
T |
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| Q |
208 |
agagaaaactaaacatgttagatagctgcaaattaaatagcacttgtaatgataataacttcaatagatttctgtcatgccaacatgtgcc-ttaaggaa |
306 |
Q |
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| T |
42470164 |
aaagaaaacaaaacatgttagatagctgcaaattaaatagcactagtaatgataataacttcaatagatttctgtcatgccaacatgtgcctttaaggaa |
42470065 |
T |
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| Q |
307 |
ggcgttaagttatctaccaatagaaatcgtgtgatggnnnnnnnnnnnctttttaactttgaatgtatgaatttcataaaaatttctataactagtccat |
406 |
Q |
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| T |
42470064 |
ggcgttaagttatctaccaatagaaatcgtgtgatggaaaaaaaaaaaaaatttaactttgaatgtatgaatttcataaaaatttctataactagtccat |
42469965 |
T |
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| Q |
407 |
taacttgtgttttaaggcacatgttacaataattaataagagaatacatacctccttttattgaaggagacttctaggtagatgccaaattcctgtagtg |
506 |
Q |
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| T |
42469964 |
taacttgtgttttaaggcacatgttacaataattaataagagaatacatacctccttttattgaaggagacttctaggcagatgccaaattcctgtagtg |
42469865 |
T |
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| Q |
507 |
aagttgaaactgacaagagta |
527 |
Q |
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| T |
42469864 |
aagttgaaactgacaagagta |
42469844 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 579 - 636
Target Start/End: Complemental strand, 42469811 - 42469754
Alignment:
| Q |
579 |
gggaatggagtctaaacttttggataaattgcaaagagcacaaatatcatcatatcat |
636 |
Q |
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| T |
42469811 |
gggaatggagtctaaacttttggataaattgcaaagagcacaaatatcatcctatcat |
42469754 |
T |
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