View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_1 (Length: 834)
Name: NF1305_low_1
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 286; Significance: 1e-160; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 105 - 461
Target Start/End: Complemental strand, 14514584 - 14514227
Alignment:
| Q |
105 |
atccaacacatgattatttttctaattaatcaatcaaccagaatttattatattaatgttttat-attagattgggttatgataggtttttcgggctgct |
203 |
Q |
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| T |
14514584 |
atccaacacatgattatttttctaattaatcaatcaaccaaaatttattatataaatgtttttttattagattgggttataataggtttttcgggccgct |
14514485 |
T |
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| Q |
204 |
tcgctttaaattttgtctatcccactaaactaaacaaaaaagagcaagttcacgagttggcatgcgagatcatttcgcccctgcccagttttttcaacga |
303 |
Q |
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| T |
14514484 |
tcgctttaaattttgtgtatcccactaaacaaaaaaaaaagaagcaagttcacgagttggcatgcgagatcatttcgcccctgcccagttttttcaacga |
14514385 |
T |
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| Q |
304 |
gtaagtggagcaggccaactaaagaagaaaagttcgaaacatcgggttagaaaaactaattcggtatatcggatttattttgccaccttaatttttacac |
403 |
Q |
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| T |
14514384 |
gtaagtggagcaggccaactaaagaagacaagttcgaaacatcgggttaaaaaaactaattcggtatatcggacttgttttgccaccttaatttttacac |
14514285 |
T |
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| Q |
404 |
tctcatatcgttcttaattaaggaatgaaagttcaataatttcttagatataattttt |
461 |
Q |
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| T |
14514284 |
tctcatatcgttcttaattaatgaatgaaagttcaataattttttagatataattttt |
14514227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 182; E-Value: 6e-98
Query Start/End: Original strand, 583 - 805
Target Start/End: Complemental strand, 14513692 - 14513468
Alignment:
| Q |
583 |
ggaggaagataatagtacccaagtgagagaagggtatagattctatacatcaaaaatcac--acacaagaaaaagacatgttcagatttttattccattc |
680 |
Q |
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| T |
14513692 |
ggaggaagataatagtacccaagtgagaaaagggtatagattatatacaccaaaaaccatcaacacaagaaaaagacatgttcagatttttattccattc |
14513593 |
T |
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| Q |
681 |
tcaaaaatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttttcattcattaatttcaagtttaagaacaagaatcttaatatcacta |
780 |
Q |
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| T |
14513592 |
tcaaaaatatccaaggtgaagaacaaaaccaatgaaaaagacacataaaccttctcattgattaatttcaagtttaggaacaagaatcttaatatcacta |
14513493 |
T |
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| Q |
781 |
caatatttccttcacctactcatcc |
805 |
Q |
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| T |
14513492 |
caatatttccttcacctactcatcc |
14513468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 488 - 543
Target Start/End: Complemental strand, 14513787 - 14513732
Alignment:
| Q |
488 |
ctatttttccagagttatatgaaaagtagaagaatcttgttttgaggaggaggaga |
543 |
Q |
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| T |
14513787 |
ctatttttccagagttatatgaaaagtagaagcatcttgttttgaggaggtggaga |
14513732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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