View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_10 (Length: 663)
Name: NF1305_low_10
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 30 - 648
Target Start/End: Complemental strand, 24856095 - 24855480
Alignment:
| Q |
30 |
ccaccaccatcaactttgaaatttgagacactgtcaaacacaatccagtgttgcctatcttcttcatatgctgacatttgagaccatgcttcaattgttc |
129 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24856095 |
ccaccaccatcaactttgaaatttgagacactatcaaacacaatccagtgttgcctatcttcttcatatgctgacatttgagaccatgcttcaattgttc |
24855996 |
T |
|
| Q |
130 |
catagagctaacatgatgaattgggaaaataaaacaattacaataaattgattttgaacatggtataaggagnnnnnnnnnnnctttctaattgagtgtc |
229 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||||||| |
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| T |
24855995 |
catagagctaacatgatgaattgggaaaataaaacaattacaatgaattgattttgaacatggtataaggagaaaaaaaaa--ctatctaattgagtgtc |
24855898 |
T |
|
| Q |
230 |
taactaagctttactttgtgaactaatctaaggcagatttgtcaattgcagtattggcggatttatccatctgtaacttaattaactgaattattgagga |
329 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||| |
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| T |
24855897 |
tcactaagctttactttgtgaactaatctaaggcagatttgtcaattgcagtactggcggatttatccatcattaacttaattatctgaattattgagga |
24855798 |
T |
|
| Q |
330 |
tttattccgtcaccaatgttattgatggtttttgttgcatttctgagggtttagaccgtcattaattaccgagggtctaaataattcagtaatggaattt |
429 |
Q |
| |
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|||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
24855797 |
tttatttcgtcagcaatgttattgagggtttttgttgcatttctgagggtttagaccgtcattaattaccgagggtctaaataatttagtaatgaaattt |
24855698 |
T |
|
| Q |
430 |
taaattgatccctaataaagagaattcttatagtgtaagactcaccataaaggcagtatttggttgacatggacctgaaaaagttattggcttgagacga |
529 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
24855697 |
taa-ttgatccctaataaagagaattcttatagtgtaagactcaccataaaggcagtatttggttgacatggacctgaaaaagttattggcttgagacga |
24855599 |
T |
|
| Q |
530 |
tatatcctatttttgggtaccacaaggacatacccattagaacatgcttcattccatgccttcttaaatgccttaaaggataaattaaatgaaatgaaaa |
629 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24855598 |
tatatcctatttttgggtaccacaaggacataccctttagaacatgcttcattccatgccttcttaaatgccttaaaggataaattaaatgaaatgaaaa |
24855499 |
T |
|
| Q |
630 |
agtgagaaagtttgagaat |
648 |
Q |
| |
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||||||||| ||||||||| |
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| T |
24855498 |
agtgagaaattttgagaat |
24855480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 308 - 464
Target Start/End: Original strand, 27410030 - 27410187
Alignment:
| Q |
308 |
taattaactgaattattgaggatttattccgtcaccaatgttattgatggtttt-tgttgcatttctgagggtttagaccgtcattaattaccgagggtc |
406 |
Q |
| |
|
|||| |||||||||||||||| |||||||||||| ||||||||||| |||||| | || |||| |||||||||||||| | || ||||||| ||||||| |
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| T |
27410030 |
taatcaactgaattattgagggtttattccgtcagtaatgttattgagggttttctattacattactgagggtttagactgccagtaattactgagggtc |
27410129 |
T |
|
| Q |
407 |
taaataattcagtaatggaattttaaattgatccctaataaagagaattcttatagtg |
464 |
Q |
| |
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|| || |||||||| |||||||| ||| || ||||||||| |||||||| ||||| |
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|
| T |
27410130 |
tagatccctcagtaattcaattttaagttggtcactaataaagggaattcttgtagtg |
27410187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 251 - 464
Target Start/End: Complemental strand, 31978749 - 31978535
Alignment:
| Q |
251 |
actaatctaaggcagatttgtcaattgcagtattggcggatttatccatctgtaacttaattaactgaattattgaggatttattccgtcaccaatgtta |
350 |
Q |
| |
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|||||||||||| ||||||||| |||| |||| | ||||||||||| || |||| |||| |||||||||||||||| |||||||||||| ||||||| |
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| T |
31978749 |
actaatctaaggtagatttgtcgattgtagtaccgacggatttatccgtcagtaatgtaatcaactgaattattgagggtttattccgtcagtaatgtta |
31978650 |
T |
|
| Q |
351 |
ttgatggtttt-tgttgcatttctgagggtttagaccgtcattaattaccgagggtctaaataattcagtaatggaattttaaattgatccctaataaag |
449 |
Q |
| |
|
|||| |||||| | || |||| |||||||||||||| | || ||||||| ||||||||| || |||||||| |||||||| ||| || ||||||||| |
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| T |
31978649 |
ttgagggttttctattacattactgagggtttagactgccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaag |
31978550 |
T |
|
| Q |
450 |
agaattcttatagtg |
464 |
Q |
| |
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|||||||| ||||| |
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| T |
31978549 |
ggaattcttgtagtg |
31978535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 251 - 465
Target Start/End: Original strand, 29915580 - 29915795
Alignment:
| Q |
251 |
actaatctaaggcagatttgtcaattgcagtattggcggatttatccatctgtaacttaattaactgaattattgaggatttattccgtcaccaatgtta |
350 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| || |||||||||| || |||| |||| |||| ||||||||||| |||||||||||| ||||||| |
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| T |
29915580 |
actaatctaaggtagatttgtcgattgtagtactgatggatttatccgtcagtaatgtaatcaactaaattattgagggtttattccgtcagtaatgtta |
29915679 |
T |
|
| Q |
351 |
ttgatggtttt-tgttgcatttctgagggtttagaccgtcattaattaccgagggtctaaataattcagtaatggaattttaaattgatccctaataaag |
449 |
Q |
| |
|
|||| |||||| | || |||| |||||||||||||| | || ||||||| ||||||||| || |||||||| |||||||| ||| || ||||||||| |
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| T |
29915680 |
ttgagggttttctattacattactgagggtttagactgccagtaattactgagggtctagatccctcagtaattcaattttaagttggtcactaataaag |
29915779 |
T |
|
| Q |
450 |
agaattcttatagtgt |
465 |
Q |
| |
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|||||||| |||||| |
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| T |
29915780 |
ggaattcttgtagtgt |
29915795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 482 - 602
Target Start/End: Complemental strand, 9671380 - 9671260
Alignment:
| Q |
482 |
gcagtatttggttgacatggacctgaaaaagttattggcttgagacgatatatcctatttttgggtaccacaaggacatacccattagaacatgcttcat |
581 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| ||||| || || ||| |||| | || | ||| ||||||||||| || | ||||||||||||||| |||| |
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| T |
9671380 |
gcagtattgggttggcatggccctgaaaatgttataggatttagatgatagacactttgtttaggtaccacaagaaccttcccattagaacatgcctcat |
9671281 |
T |
|
| Q |
582 |
tccatgccttcttaaatgcct |
602 |
Q |
| |
|
|||||||| | | |||||||| |
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|
| T |
9671280 |
tccatgccatttcaaatgcct |
9671260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 315 - 378
Target Start/End: Complemental strand, 22014124 - 22014061
Alignment:
| Q |
315 |
ctgaattattgaggatttattccgtcaccaatgttattgatggtttttgttgcatttctgaggg |
378 |
Q |
| |
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||||| |||||||| ||||||||||||| ||||||||||| ||||||| |||||| ||||||| |
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| T |
22014124 |
ctgaaatattgagggtttattccgtcactaatgttattgagggttttttgtgcattactgaggg |
22014061 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 374 - 430
Target Start/End: Original strand, 6731766 - 6731822
Alignment:
| Q |
374 |
gagggtttagaccgtcattaattaccgagggtctaaataattcagtaatggaatttt |
430 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||| ||||||||| |||||| |
|
|
| T |
6731766 |
gagggtttagaccgtcagtaattactgagggtctaaatccgtcagtaatgtaatttt |
6731822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 316 - 430
Target Start/End: Complemental strand, 32089986 - 32089871
Alignment:
| Q |
316 |
tgaattattgaggatttattccgtcaccaatgttattgatgg-tttttgttgcatttctgagggtttagaccgtcattaattaccgagggtctaaataat |
414 |
Q |
| |
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|||| ||||||||||||||||||||| ||||||||||| || ||||| || ||| |||||||| || |||||| |||| || |||| ||||||| |
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| T |
32089986 |
tgaaatattgaggatttattccgtcaataatgttattgagggttttttttttaattactgagggtgtactccgtcagtaatcactgaggatctaaatccc |
32089887 |
T |
|
| Q |
415 |
tcagtaatggaatttt |
430 |
Q |
| |
|
||||||||| |||||| |
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|
| T |
32089886 |
tcagtaatgcaatttt |
32089871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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