View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_101 (Length: 311)
Name: NF1305_low_101
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_101 |
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Alignment Details
Target: chr1 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 64 - 242
Target Start/End: Complemental strand, 42853621 - 42853443
Alignment:
| Q |
64 |
ggaggagcagagagtggaggagggtgtcttagttgagttgaacagtgaaaaactaattgtgaaggtaattattctattctaagggtacaaaaagagcaga |
163 |
Q |
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| T |
42853621 |
ggagaagcaaagagtggaggagggtgtcttagttgagttgaacagtgaaaaactaattgtgaaggtaattattctattctaagggtacaaaaagagcaga |
42853522 |
T |
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| Q |
164 |
gagaaagtgagtcaaaaggtacccacccttttgtaatctaaaatcccactcttgtgttaattttctctctttctctgtg |
242 |
Q |
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| T |
42853521 |
gagaaagtgagtcaaaaggtacccacccttttgtaatctaaaatcccactcttgtgttaattttctctctttctctgtg |
42853443 |
T |
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