View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_107 (Length: 303)

Name: NF1305_low_107
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_107
NF1305_low_107
[»] chr6 (3 HSPs)
chr6 (60-160)||(5866423-5866523)
chr6 (70-160)||(1308235-1308325)
chr6 (171-219)||(30845559-30845608)
[»] chr4 (4 HSPs)
chr4 (60-160)||(19837617-19837717)
chr4 (67-154)||(19309152-19309239)
chr4 (58-160)||(43469453-43469555)
chr4 (176-208)||(6410005-6410037)
[»] chr7 (3 HSPs)
chr7 (60-160)||(45459794-45459894)
chr7 (70-160)||(4164521-4164611)
chr7 (70-160)||(34206812-34206902)
[»] chr5 (6 HSPs)
chr5 (62-160)||(842464-842562)
chr5 (85-160)||(2682223-2682298)
chr5 (173-220)||(7767078-7767126)
chr5 (173-219)||(7271836-7271883)
chr5 (171-225)||(26331061-26331116)
chr5 (173-219)||(27170162-27170209)
[»] chr8 (5 HSPs)
chr8 (67-160)||(41691325-41691418)
chr8 (157-219)||(15050026-15050090)
chr8 (187-248)||(23635955-23636017)
chr8 (173-216)||(5994635-5994679)
chr8 (173-209)||(10408838-10408874)
[»] chr3 (4 HSPs)
chr3 (70-160)||(16896143-16896233)
chr3 (173-220)||(18269779-18269827)
chr3 (70-137)||(19233570-19233636)
chr3 (60-160)||(11584559-11584659)
[»] chr1 (5 HSPs)
chr1 (160-207)||(26841964-26842011)
chr1 (173-207)||(11408058-11408092)
chr1 (173-207)||(39709071-39709105)
chr1 (172-220)||(11814814-11814863)
chr1 (173-209)||(26236725-26236761)
[»] chr2 (2 HSPs)
chr2 (173-219)||(34660288-34660335)
chr2 (173-209)||(1895423-1895459)


Alignment Details
Target: chr6 (Bit Score: 77; Significance: 9e-36; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 60 - 160
Target Start/End: Original strand, 5866423 - 5866523
Alignment:
Q  60 ggagcagagaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagt 159  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||| ||||||||||||    
T  5866423 ggagcagagaggtcggttgaaggaaggtggtgtgacggggtcagcacggtggagggagatagttaaaattcaaaatggaattggtgtagagggtggtagt 5866522  T
Q  160 t 160  Q
    |    
T  5866523 t 5866523  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 1308235 - 1308325
Alignment:
Q  70 ggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    |||||||| ||||| || ||  ||||||| ||||| |||||||||||||| |||||||||||||||||| | | |||||| ||||||||||    
T  1308235 ggtcggttgaaggaggggggcatgacaggttcagcttggtggagggagataattaaaattcaaaatggagtagatgtggaaggtggtagtt 1308325  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 30845608 - 30845559
Alignment:
Q  171 tttttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtg 219  Q
    ||||||||||||||| ||| ||||||||| ||||||||| ||||||||||    
T  30845608 tttttggttgtgttggtttatggtgcttcgtggtggtttccatggtggtg 30845559  T

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Target: chr4 (Bit Score: 77; Significance: 9e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 19837717 - 19837617
Alignment:
Q  60 ggagcagagaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagt 159  Q
    |||||||||||||||||| | |||||||||||| || |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  19837717 ggagcagagaggtcggttgagggaaggtggtgtaacggggtcagcatggtggagggagatagttaaaattcaaaatggaattggtgtggagggtggtagt 19837618  T
Q  160 t 160  Q
    |    
T  19837617 t 19837617  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 19309152 - 19309239
Alignment:
Q  67 agaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtg 154  Q
    ||||| ||||||| ||| ||||| ||||| ||||| || ||||||||||||||  | ||||||||||||||||| |||||||||||||    
T  19309152 agagggcggttaagggagggtggagtgacggggtctgcttggtggagggagatagtaaaaattcaaaatggaataggtgtggagggtg 19309239  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 58 - 160
Target Start/End: Original strand, 43469453 - 43469555
Alignment:
Q  58 gaggagcagagaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggta 157  Q
    ||||| || ||||| ||||||| ||| ||||| | ||| |||||||| ||||||||||||||  | |||||| ||||||| || |||||||||||| |||    
T  43469453 gaggaacacagagggcggttaagggagggtggcgcgacggggtcagcttggtggagggagattgtaaaaatttaaaatggcataggtgtggagggttgta 43469552  T
Q  158 gtt 160  Q
    |||    
T  43469553 gtt 43469555  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 208
Target Start/End: Complemental strand, 6410037 - 6410005
Alignment:
Q  176 ggttgtgttgatttgtggtgcttcatggtggtt 208  Q
    |||||||||| ||||||||||||||||||||||    
T  6410037 ggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 45459894 - 45459794
Alignment:
Q  60 ggagcagagaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagt 159  Q
    |||||| ||||||||||| | ||||||||||| ||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  45459894 ggagcatagaggtcggttgagggaaggtggtgcgacggggtcagcatggtggagggagatagttaaaattcaaaatggaattggtgtggagggtggtagt 45459795  T
Q  160 t 160  Q
    |    
T  45459794 t 45459794  T

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Target: chr7; HSP #2
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 4164611 - 4164521
Alignment:
Q  70 ggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    |||||||| ||||| || ||  ||||||| ||||| |||||||||||||| |||||||||||||||||| | |||||||| ||||||||||    
T  4164611 ggtcggttgaaggaggggggcatgacaggttcagcttggtggagggagataattaaaattcaaaatggagtaggtgtggaaggtggtagtt 4164521  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 160
Target Start/End: Complemental strand, 34206902 - 34206812
Alignment:
Q  70 ggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    |||||||| ||||| || ||  ||| ||| ||||| |||| ||| ||||| |||||||||||||||||| | |||||||| ||||||||||    
T  34206902 ggtcggttgaaggaggggggcatgataggttcagcttggttgagtgagataattaaaattcaaaatggagtaggtgtggaaggtggtagtt 34206812  T

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Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 842562 - 842464
Alignment:
Q  62 agcagagaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    |||||||| ||||||| | ||| ||||||||||| |||||||| | ||||||||||||  ||||||||||||||||||| ||||||||||||| |||||    
T  842562 agcagagatgtcggttgagggagggtggtgtgacggggtcagcttagtggagggagatagttaaaattcaaaatggaataggtgtggagggtgatagtt 842464  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 85 - 160
Target Start/End: Complemental strand, 2682298 - 2682223
Alignment:
Q  85 ggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    ||||| |||||||| ||| | ||||||||||||||  ||| |||||||||||| || ||||||||| |||||||||    
T  2682298 ggtggcgtgacaggttcatcttggtggagggagattgttagaattcaaaatggcataggtgtggagagtggtagtt 2682223  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 7767078 - 7767126
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatgg-tggtttcatggtggtgt 220  Q
    ||||||||||||| |||||||||||||||||  ||||||||||||||||    
T  7767078 tttggttgtgttggtttgtggtgcttcatggcgggtttcatggtggtgt 7767126  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 7271883 - 7271836
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtg 219  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||    
T  7271883 tttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtg 7271836  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 26331061 - 26331116
Alignment:
Q  171 tttttggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtgtagata 225  Q
    ||||| ||||||||| ||||||||||||| |||||||||| |||||||||| ||||    
T  26331061 tttttagttgtgttggtttgtggtgcttcgtggtggtttctatggtggtgttgata 26331116  T

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Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 27170162 - 27170209
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtg 219  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||    
T  27170162 tttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtg 27170209  T

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Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 67 - 160
Target Start/End: Original strand, 41691325 - 41691418
Alignment:
Q  67 agaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    ||||| || |||| ||||||||| ||||| |||||||| ||||||||||||||  | |||||||||||||| || |||||||||||||| ||||    
T  41691325 agagggcgattaagggaaggtggagtgacggggtcagcttggtggagggagatagtaaaaattcaaaatggtataggtgtggagggtgggagtt 41691418  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 219
Target Start/End: Original strand, 15050026 - 15050090
Alignment:
Q  157 agttcgtaggttatttttt-ggttgtgttgatttgtggtgcttcatggtggtttc-atggtggtg 219  Q
    ||||||||||||||||||| || | ||||| ||||||||||||| |||||||||| |||||||||    
T  15050026 agttcgtaggttatttttttggctatgttggtttgtggtgcttcgtggtggtttcaatggtggtg 15050090  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 248
Target Start/End: Complemental strand, 23636017 - 23635955
Alignment:
Q  187 tttgtggtgcttcatggtggttt-catggtggtgtagatactggatattctgtggtgctgctc 248  Q
    ||||||||||||||||||||||| ||||||||||| |||||| | | || ||||||| |||||    
T  23636017 tttgtggtgcttcatggtggtttccatggtggtgttgatactaggttttttgtggtggtgctc 23635955  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 216
Target Start/End: Complemental strand, 5994679 - 5994635
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtggt-ttcatggtg 216  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||    
T  5994679 tttggttgtgttggtttgtggtgcttcatggcggtattcatggtg 5994635  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 10408874 - 10408838
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtggttt 209  Q
    ||||||||||||| ||||||||||||||||| |||||    
T  10408874 tttggttgtgttggtttgtggtgcttcatggaggttt 10408838  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 160
Target Start/End: Original strand, 16896143 - 16896233
Alignment:
Q  70 ggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagtt 160  Q
    |||||||| ||||| || ||  ||||| | ||||| |||||||||||||| |||||||||||||||||| | |||||||| ||||||||||    
T  16896143 ggtcggttgaaggaggggggcatgacatgttcagcttggtggagggagataattaaaattcaaaatggagtaggtgtggaaggtggtagtt 16896233  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 18269779 - 18269827
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtgt 220  Q
    ||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  18269779 tttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgt 18269827  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 19233636 - 19233570
Alignment:
Q  70 ggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatgg 137  Q
    |||||||| ||||| || |||||||| || ||||| |||||||||||||| |||||||||||||||||    
T  19233636 ggtcggttgaaggaggg-ggtgtgacgggttcagcttggtggagggagataattaaaattcaaaatgg 19233570  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 160
Target Start/End: Complemental strand, 11584659 - 11584559
Alignment:
Q  60 ggagcagagaggtcggttaaaggaaggtggtgtgacagggtcagcatggtggagggagatgattaaaattcaaaatggaattggtgtggagggtggtagt 159  Q
    ||||||||||||| |||| | ||| |||||   || ||| | ||| |||||||||||||    |||||||||||||||||| |||||||||||| |||||    
T  11584659 ggagcagagaggtaggttgagggagggtggcacgataggtttagcttggtggagggagagagctaaaattcaaaatggaataggtgtggagggtagtagt 11584560  T
Q  160 t 160  Q
    |    
T  11584559 t 11584559  T

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Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 26841964 - 26842011
Alignment:
Q  160 tcgtaggttattttttggttgtgttgatttgtggtgcttcatggtggt 207  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||    
T  26841964 tcgtaggttgttttttggttgtgttgatttgtggtgtttcatggtggt 26842011  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 11408058 - 11408092
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtggt 207  Q
    ||||||||||||| |||||||||||||||||||||    
T  11408058 tttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 207
Target Start/End: Original strand, 39709071 - 39709105
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtggt 207  Q
    ||||||||||||| |||||||||||||||||||||    
T  39709071 tttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 11814863 - 11814814
Alignment:
Q  172 ttttggttgtgttgatttgtggtgcttcatggtggttt-catggtggtgt 220  Q
    |||||||||||||  ||||||||||||| ||||||||| |||||||||||    
T  11814863 ttttggttgtgtttgtttgtggtgcttcgtggtggtttccatggtggtgt 11814814  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Original strand, 26236725 - 26236761
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtggttt 209  Q
    |||||||| |||| |||||||||||||||||||||||    
T  26236725 tttggttgcgttggtttgtggtgcttcatggtggttt 26236761  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 173 - 219
Target Start/End: Complemental strand, 34660335 - 34660288
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtgg-tttcatggtggtg 219  Q
    ||||||||||||| ||||||||||||||||| || |||||||||||||    
T  34660335 tttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtg 34660288  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 209
Target Start/End: Complemental strand, 1895459 - 1895423
Alignment:
Q  173 tttggttgtgttgatttgtggtgcttcatggtggttt 209  Q
    ||||||||||||| |||||||| ||||||||||||||    
T  1895459 tttggttgtgttggtttgtggtacttcatggtggttt 1895423  T

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