View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_111 (Length: 299)
Name: NF1305_low_111
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_111 |
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Alignment Details
Target: chr2 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 10668501 - 10668595
Alignment:
| Q |
59 |
cacagataaacattcaaacaagtctactgctaaaaaagtatcgctaagccttttttctcaacttccttcttattcatttcctttgatttgatgga |
153 |
Q |
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| T |
10668501 |
cacagataaacattcaaacaagtctactgctaaaaaagtatcgctaagccttttttctcaacttccttcttattcatttcctttgatttgatgga |
10668595 |
T |
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Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 155 - 238
Target Start/End: Original strand, 10668641 - 10668724
Alignment:
| Q |
155 |
gagtctttcatttcctatgtttttacctcattttcaccttcatatttctctcttctttgtttatgctccttatttatttgtctc |
238 |
Q |
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| T |
10668641 |
gagtctttcatttcctaggtttttacctcattttcaccttcatatttctctcttctttgtttatgctccttatttatttgtctc |
10668724 |
T |
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