View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_115 (Length: 297)
Name: NF1305_low_115
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_115 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 55 - 243
Target Start/End: Original strand, 39115273 - 39115475
Alignment:
| Q |
55 |
agcagagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc |
154 |
Q |
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| T |
39115273 |
agcaaagatgagtggttgtggtttaggactgtggttgaacattagcttattaattattcattaggttgcattatatttgtcaccatgggccattcacttc |
39115372 |
T |
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| Q |
155 |
acatttgt--------------ataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctgtg |
240 |
Q |
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| T |
39115373 |
acatttgtataatttgatttgaataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtctttg |
39115472 |
T |
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| Q |
241 |
gtg |
243 |
Q |
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||| |
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| T |
39115473 |
gtg |
39115475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 157 - 237
Target Start/End: Complemental strand, 38617217 - 38617137
Alignment:
| Q |
157 |
atttgtataatgtgacagtagatctctatattagaccactataggctagcaatggacttccacttgtgtgcaactttgtct |
237 |
Q |
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||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38617217 |
atttgaataatgtgaaagtagatctctatattagaccactataggctagcaatggacttccacttgagtgcaactttgtct |
38617137 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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