View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_120 (Length: 292)
Name: NF1305_low_120
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_120 |
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Alignment Details
Target: chr8 (Bit Score: 94; Significance: 6e-46; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 50 - 186
Target Start/End: Original strand, 13079526 - 13079663
Alignment:
| Q |
50 |
gagcagagagagttgaatgaaatgaaaaagcactcagnnnnnnnnnnnn-gagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaa |
148 |
Q |
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| T |
13079526 |
gagcagagagagttgaatgaaatgaaaaagcactcagaaaaaaataaaaagagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaa |
13079625 |
T |
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| Q |
149 |
tattatgttatgtttggttttattgataattatttata |
186 |
Q |
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| T |
13079626 |
tattatgttatgtttggttttattgataattatttata |
13079663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 13079709 - 13079752
Alignment:
| Q |
199 |
tatcgaatcatgtcatgtgtgaaactccctctctttctctgtgg |
242 |
Q |
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| T |
13079709 |
tatcgaatcatgtcatgtgtgaaactccctctctttctctgtgg |
13079752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 99 - 186
Target Start/End: Complemental strand, 19340524 - 19340437
Alignment:
| Q |
99 |
gagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttatgtttggttttattgataattatttata |
186 |
Q |
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| T |
19340524 |
gagattgattcattcattatatcgaaacaacaataacaaagggtaaaaaatattatgttacgtttggttttattgataattatttata |
19340437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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