View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_121 (Length: 290)
Name: NF1305_low_121
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_121 |
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Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 10 - 140
Target Start/End: Complemental strand, 41080520 - 41080391
Alignment:
| Q |
10 |
aacaatataccagagctttaaagcaaaaatatgtcatgaaaggctgtttagttaaagaagcgagagtaaaccactaaattggtctctatatttgtaagtc |
109 |
Q |
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| T |
41080520 |
aacaatataccagagctttaaagcaaaaatatgtcatgaaaggctgtttagttaaagaagcaagagtaaaccattaaatt-gtctctatatttgtaagtc |
41080422 |
T |
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| Q |
110 |
ttgaccaaaaaattatcttgtaaaactatgg |
140 |
Q |
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| T |
41080421 |
ttgaccaaaaaattatcttgtaaaactatgg |
41080391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 160 - 262
Target Start/End: Complemental strand, 41080365 - 41080263
Alignment:
| Q |
160 |
ggggtgaattgggtgaaagttacaaacctaagtgcataaacgcagtgaccataacatggttactctccttgacatcttccacaaaaacgtgaatatttgg |
259 |
Q |
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| T |
41080365 |
ggggtgaattgggtgaaagttacaaacctaagtgcataaacgcagtgaccataacatggttactctccttgacatcttccacgaaaacgtgaatatttgg |
41080266 |
T |
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| Q |
260 |
acc |
262 |
Q |
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||| |
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| T |
41080265 |
acc |
41080263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 109
Target Start/End: Complemental strand, 32942498 - 32942462
Alignment:
| Q |
73 |
gagtaaaccactaaattggtctctatatttgtaagtc |
109 |
Q |
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| T |
32942498 |
gagtaaaccattaaattgatctctatatttgtaagtc |
32942462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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