View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_122 (Length: 288)
Name: NF1305_low_122
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_122 |
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Alignment Details
Target: chr5 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 41304385 - 41304656
Alignment:
| Q |
1 |
cacatactcgccccgatattgcctatgccgtaagtgtggtgagtcagtttatgcataatccaagtgatgaacatatgggtgcagtaaaccgaatactttg |
100 |
Q |
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| T |
41304385 |
cacatactcgccccgatattgcctatgccgtaagtgtggtgagtcagtttatgcataatccaagtgatgaacatatgggtgcagtaaaccgaatactttg |
41304484 |
T |
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| Q |
101 |
ctatttaaaatcctcatcgggaaaagggttgatgttttctaagaataatcacttgaatgttgaagggtacaccgactcagattgggcagggaatgttcta |
200 |
Q |
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| T |
41304485 |
ctatttaaaatcctcaccgggaaaagggttgatgttttctaagaataatcacttgaatgttgaagggtacaccgactcagattgggcagggaatgttcta |
41304584 |
T |
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| Q |
201 |
gacagaaaatcaacatcaggctatttcacatttgtgggagggaatctagttacttggagaagtaagaagcaa |
272 |
Q |
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| T |
41304585 |
gatagaaaatcaacatcaggctatttcacatttgtgggagggaatctagttacttggagaagtaagaagcaa |
41304656 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 268
Target Start/End: Complemental strand, 38460508 - 38460447
Alignment:
| Q |
207 |
aaatcaacatcaggctatttcacatttgtgggagggaatctagttacttggagaagtaagaa |
268 |
Q |
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| T |
38460508 |
aaatcaacctcaggctattttacctttgtcggagggaatttggttacatggaaaagtaagaa |
38460447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 10669737 - 10669797
Alignment:
| Q |
204 |
agaaaatcaacatcaggctatttcacatttgtgggagggaatctagttacttggagaagta |
264 |
Q |
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| T |
10669737 |
agaaaatcaacctcaggctactttacgtttgtaggaggtaatttagttacatggagaagta |
10669797 |
T |
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