View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_125 (Length: 280)

Name: NF1305_low_125
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_125
NF1305_low_125
[»] chr3 (5 HSPs)
chr3 (31-280)||(48384363-48384610)
chr3 (43-198)||(48397611-48397765)
chr3 (43-127)||(48364795-48364879)
chr3 (150-206)||(14145869-14145925)
chr3 (150-205)||(48364936-48364991)
[»] scaffold0024 (1 HSPs)
scaffold0024 (150-208)||(27531-27589)
[»] chr1 (14 HSPs)
chr1 (158-208)||(49517025-49517075)
chr1 (150-208)||(25006091-25006149)
chr1 (156-208)||(15360849-15360901)
chr1 (150-206)||(30371105-30371161)
chr1 (159-210)||(34179938-34179989)
chr1 (149-208)||(44032055-44032114)
chr1 (150-208)||(27738237-27738295)
chr1 (150-208)||(49557096-49557154)
chr1 (163-208)||(1879097-1879142)
chr1 (77-142)||(25719760-25719825)
chr1 (150-190)||(7218131-7218171)
chr1 (92-148)||(9507314-9507370)
chr1 (150-206)||(28467364-28467420)
chr1 (150-198)||(30257648-30257696)
[»] chr8 (6 HSPs)
chr8 (149-206)||(34551077-34551134)
chr8 (150-198)||(34770857-34770905)
chr8 (77-148)||(1664452-1664523)
chr8 (79-142)||(9700090-9700153)
chr8 (150-208)||(42597356-42597414)
chr8 (150-198)||(2093244-2093292)
[»] scaffold0199 (1 HSPs)
scaffold0199 (77-148)||(6893-6964)
[»] chr5 (6 HSPs)
chr5 (156-206)||(583836-583886)
chr5 (166-208)||(10303756-10303798)
chr5 (158-208)||(14295461-14295511)
chr5 (172-208)||(35095862-35095898)
chr5 (156-208)||(35135725-35135777)
chr5 (175-219)||(39128583-39128627)
[»] chr2 (9 HSPs)
chr2 (150-208)||(42907314-42907372)
chr2 (150-203)||(11513858-11513911)
chr2 (150-208)||(29935958-29936016)
chr2 (150-208)||(37053549-37053607)
chr2 (79-140)||(15370241-15370302)
chr2 (150-198)||(33942115-33942163)
chr2 (150-190)||(35755559-35755599)
chr2 (121-208)||(39567858-39567945)
chr2 (158-198)||(43141836-43141876)
[»] chr4 (10 HSPs)
chr4 (159-208)||(8130129-8130178)
chr4 (156-208)||(4071837-4071889)
chr4 (149-195)||(927260-927306)
chr4 (156-198)||(13949907-13949949)
chr4 (150-208)||(49219094-49219152)
chr4 (150-208)||(54325094-54325152)
chr4 (91-148)||(6987671-6987728)
chr4 (150-206)||(10192241-10192297)
chr4 (76-152)||(11264380-11264456)
chr4 (150-222)||(29373944-29374016)
[»] chr7 (9 HSPs)
chr7 (150-206)||(1417221-1417277)
chr7 (153-208)||(35536062-35536117)
chr7 (72-130)||(431413-431471)
chr7 (150-208)||(27481351-27481409)
chr7 (150-208)||(49060495-49060553)
chr7 (159-208)||(23918912-23918961)
chr7 (150-222)||(9527147-9527219)
chr7 (158-198)||(27548228-27548268)
chr7 (223-259)||(46056149-46056185)
[»] chr6 (8 HSPs)
chr6 (158-197)||(5550098-5550137)
chr6 (151-206)||(22742323-22742378)
chr6 (150-208)||(4006669-4006727)
chr6 (174-208)||(29269851-29269885)
chr6 (158-207)||(281913-281962)
chr6 (159-208)||(29274295-29274344)
chr6 (156-208)||(24836262-24836314)
chr6 (86-162)||(26559164-26559239)


Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 31 - 280
Target Start/End: Original strand, 48384363 - 48384610
Alignment:
Q  31 aatatatgcattattattacttttagagttattgttgcttgtaagagtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgaga 130  Q
    |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  48384363 aatatatgcattattattacttt--gagttattgttgcttgtaagagtctgtttagattaactaaattgaggttatctactagcttaatcatttgtgaga 48384460  T
Q  131 ctctttgggagaccttatagaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatattgataaat 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48384461 ctctttgggagaccttatagaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatattgataaat 48384560  T
Q  231 gcttaattaagttgtttatctaaccatggcctatgtgtattttcccttct 280  Q
    |||||||||||||||||||||| ||||| |||||||||||||||||||||    
T  48384561 gcttaattaagttgtttatctacccatgacctatgtgtattttcccttct 48384610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 198
Target Start/End: Complemental strand, 48397765 - 48397611
Alignment:
Q  43 attattacttttagagttattgttgcttgtaagagtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggaga 142  Q
    |||||||||| ||||||| ||| || | ||||| |  ||||| |||| ||||| |||   | |||||||||| ||| ||||||||||| | ||||| |||    
T  48397765 attattacttgtagagttgttgatggtcgtaagggcatgtttggattgacttacttgtattgatctactagcataagcatttgtgagattgtttggaaga 48397666  T
Q  143 ccttatagaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
     || || ||||| ||||||||||||||||  ||||||||||||||||| |||||||    
T  48397665 gctaat-gaaaacaacttatagcttaaataaaaacaatttgactttattttatctt 48397611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 48364795 - 48364879
Alignment:
Q  43 attattacttttagagttattgttgcttgtaagagtctgtttagattaacttaattgaggttatctactagcttaatcatttgtg 127  Q
    |||||||||| ||||||||||||||||| |||| | || |||||||| ||||| ||||| |||| ||||||  ||| ||||||||    
T  48364795 attattacttgtagagttattgttgcttttaagggcctatttagattgacttatttgagtttatttactagtataaacatttgtg 48364879  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 14145925 - 14145869
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    |||||||||||||||| || | | ||||||||| ||||||| |||||||||||||||    
T  14145925 gaaaataacttatagcatatacgaaaacaatttaactttattttatcttctgttata 14145869  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 150 - 205
Target Start/End: Original strand, 48364936 - 48364991
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttat 205  Q
    ||||| ||||||| || |||||| ||||||||||||||||| ||||||| ||||||    
T  48364936 gaaaacaacttatggcgtaaatgaaaacaatttgactttattttatcttttgttat 48364991  T

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Target: scaffold0024 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 27589 - 27531
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||| ||| ||| ||||||||||||||||| |||||||||||||||||    
T  27589 gaaaacaacttatagtttatatgaaaacaatttgactttattttatcttctgttataga 27531  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 49517075 - 49517025
Alignment:
Q  158 cttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||||| ||||||||||||||||| ||||||| |||||||||    
T  49517075 cttatagcttaaatgaaaacaatttgactttattttatcttttgttataga 49517025  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 25006091 - 25006149
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||    
T  25006091 gaaaacaacttatagcttatatgaaaacaatttgactttattttaccgtctgttataga 25006149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 15360901 - 15360849
Alignment:
Q  156 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  15360901 aacttatagcttatatgaaaacagtttgactttattttatcttttgttataga 15360849  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 30371161 - 30371105
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    ||||| ||||||||||||| ||| ||||||||||| ||||| ||||||| |||||||    
T  30371161 gaaaacaacttatagcttatatgaaaacaatttgagtttattttatcttttgttata 30371105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 34179938 - 34179989
Alignment:
Q  159 ttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatt 210  Q
    |||||||||| ||  ||||||||||||||||| ||||||| |||||||||||    
T  34179938 ttatagcttagattaaaacaatttgactttattttatcttttgttatagatt 34179989  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 149 - 208
Target Start/End: Original strand, 44032055 - 44032114
Alignment:
Q  149 agaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||  |||||||||| ||| ||||||||||||||||| ||| ||| |||||||||    
T  44032055 agaaaatagtttatagcttatatgaaaacaatttgactttattttagcttttgttataga 44032114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 27738237 - 27738295
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| || |||||||||| ||| ||||||||||||||||| ||||||| |||| ||||    
T  27738237 gaaaacaaattatagcttatatgaaaacaatttgactttattttatcttttgttgtaga 27738295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 49557154 - 49557096
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||||||| | || |||| ||||||| ||||||| |||||||||    
T  49557154 gaaaacaacttatagcttaaatgaatactatttaactttattttatcttttgttataga 49557096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 1879097 - 1879142
Alignment:
Q  163 agcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    |||||| ||| ||||| ||||||||||| |||||||||||||||||    
T  1879097 agcttatatgaaaacattttgactttattttatcttctgttataga 1879142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 142
Target Start/End: Complemental strand, 25719825 - 25719760
Alignment:
Q  77 gtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggaga 142  Q
    |||||||| |||| | ||| ||||| |||| |||| |||||| ||||| |||||||||||||||||    
T  25719825 gtctgtttggattgatttatttgagtttatttactggcttaagcatttatgagactctttgggaga 25719760  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 7218131 - 7218171
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttat 190  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  7218131 gaaaacaacttatagcttatatgaaaacaatttgactttat 7218171  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 148
Target Start/End: Complemental strand, 9507370 - 9507314
Alignment:
Q  92 cttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 148  Q
    |||| ||||| |||||||||||| ||  ||||||||||||| ||||||||| |||||    
T  9507370 cttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 28467364 - 28467420
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    ||||| ||||| ||||||| ||| ||| ||||||||||||| ||||||| |||||||    
T  28467364 gaaaacaacttgtagcttatatgaaaataatttgactttattttatcttttgttata 28467420  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 30257696 - 30257648
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||| |||||| |||||| ||||||||| ||||||||||| |||||||    
T  30257696 gaaaacaacttaaagcttatatggaaacagtttgactttattttatctt 30257648  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 149 - 206
Target Start/End: Complemental strand, 34551134 - 34551077
Alignment:
Q  149 agaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    |||||| |||||||| |||||||| |||||||||||||| |||||||||| |||||||    
T  34551134 agaaaacaacttataacttaaatgaaaacaatttgacttgatgttatcttttgttata 34551077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 34770905 - 34770857
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||||    
T  34770905 gaaaacaacttatagcttaaatgaaaacaatttgactttattttatctt 34770857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 1664523 - 1664452
Alignment:
Q  77 gtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 148  Q
    ||||||||||||  ||||| ||||| |||||||||||| ||| || |||||||||| ||||||||| |||||    
T  1664523 gtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 1664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 142
Target Start/End: Complemental strand, 9700153 - 9700090
Alignment:
Q  79 ctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggaga 142  Q
    |||||| |||||||||| ||||| |||||||||||| ||| || |||||||||| |||| ||||    
T  9700153 ctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagaga 9700090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 42597414 - 42597356
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||  ||| ||||||||| ||||||| ||||||| |||||||||    
T  42597414 gaaaacaacttatagcttgcatgaaaacaattttactttattttatcttttgttataga 42597356  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 2093292 - 2093244
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||| ||||||||||||||| | |||| |||||||||||| |||||||    
T  2093292 gaaaacaacttatagcttaaaagaaaaccatttgactttattttatctt 2093244  T

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Target: scaffold0199 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 148
Target Start/End: Complemental strand, 6964 - 6893
Alignment:
Q  77 gtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 148  Q
    ||||||||||||  ||||| ||||| |||||||||||| ||| || |||||||||| ||||||||| |||||    
T  6964 gtctgtttagatggacttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 6893  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 206
Target Start/End: Original strand, 583836 - 583886
Alignment:
Q  156 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    ||||||||||||| ||| ||||| ||||||||||| |||||||||||||||    
T  583836 aacttatagcttatatgaaaacagtttgactttattttatcttctgttata 583886  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 208
Target Start/End: Complemental strand, 10303798 - 10303756
Alignment:
Q  166 ttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||| ||||||||||||||||| ||||||| |||||||||    
T  10303798 ttaaatgaaaacaatttgactttattttatcttttgttataga 10303756  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Complemental strand, 14295511 - 14295461
Alignment:
Q  158 cttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||| ||| ||||| ||||||||||| ||||||| |||||||||    
T  14295511 cttatagcttatatgaaaacagtttgactttattttatcttttgttataga 14295461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 208
Target Start/End: Original strand, 35095862 - 35095898
Alignment:
Q  172 ggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  35095862 ggaaacaatttgactttattttatcttttgttataga 35095898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 35135725 - 35135777
Alignment:
Q  156 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||| ||| ||| | ||||||||||| ||||||| |||||||||    
T  35135725 aacttatagcttatatgaaaatagtttgactttattttatcttttgttataga 35135777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 219
Target Start/End: Complemental strand, 39128627 - 39128583
Alignment:
Q  175 aacaatttgactttatgttatcttctgttatagatttggcttata 219  Q
    |||||||||||||||| ||||||| ||||||||| || |||||||    
T  39128627 aacaatttgactttattttatcttttgttatagaattagcttata 39128583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 42907372 - 42907314
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||||| | ||||||||| ||||||| || ||||||||||||||    
T  42907372 gaaaacaacttatagcttaaacgaaaacaatttaactttattttttcttctgttataga 42907314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 150 - 203
Target Start/End: Complemental strand, 11513911 - 11513858
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgtt 203  Q
    ||||| ||||||||||||| ||| ||||||||||||||||| ||||||| ||||    
T  11513911 gaaaacaacttatagcttatatgaaaacaatttgactttattttatcttttgtt 11513858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 29936016 - 29935958
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||| |||||||||||||||| |||| |||| |  |||||||||    
T  29936016 gaaaaaaacttatagcttacatggaaacaatttgacgttattttatttgttgttataga 29935958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 37053607 - 37053549
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| |||||||| |||| ||| ||||| ||||||||||| |||| ||||||||||||    
T  37053607 gaaaaaaacttataacttatatgaaaacagtttgactttattttattttctgttataga 37053549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 79 - 140
Target Start/End: Original strand, 15370241 - 15370302
Alignment:
Q  79 ctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttggga 140  Q
    |||||| |||| ||||| ||||| ||||||||| || ||| ||||||||||||| |||||||    
T  15370241 ctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggga 15370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 33942163 - 33942115
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||| ||||||||||||| ||| ||||| ||||||||||| |||||||    
T  33942163 gaaaacaacttatagcttacatgaaaacagtttgactttattttatctt 33942115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 35755559 - 35755599
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttat 190  Q
    ||||| ||||||||||||| ||| |||||||||||||||||    
T  35755559 gaaaacaacttatagcttacatgaaaacaatttgactttat 35755599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 208
Target Start/End: Complemental strand, 39567945 - 39567858
Alignment:
Q  121 atttgtgagac-tctttgggagaccttatagaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||| | ||||||| | ||||| ||||| | |||||||||||  | |||||||||| ||||||| ||||||| |||||||||    
T  39567945 atttgtgagacctgtttgggaaaacttat-gaaaacagcttatagcttatcttgaaacaatttaactttattttatcttttgttataga 39567858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 43141876 - 43141836
Alignment:
Q  158 cttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||||||||| ||||||||||||||||||||  |||||||    
T  43141876 cttatagcttatatggaaacaatttgactttactttatctt 43141836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 8130178 - 8130129
Alignment:
Q  159 ttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    |||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  8130178 ttatagcttatatgaaaataatttgactttatgttatcttttgttataga 8130129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 208
Target Start/End: Complemental strand, 4071889 - 4071837
Alignment:
Q  156 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||| ||| ||| ||||||||||||| ||||||| |||||||||    
T  4071889 aacttatagcttatatgaaaataatttgactttattttatcttttgttataga 4071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 927306 - 927260
Alignment:
Q  149 agaaaataacttatagcttaaatggaaacaatttgactttatgttat 195  Q
    |||||| |||||||| |||| ||||||||||||||||||||| ||||    
T  927306 agaaaacaacttataacttatatggaaacaatttgactttattttat 927260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 198
Target Start/End: Original strand, 13949907 - 13949949
Alignment:
Q  156 aacttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||||||||||| ||| ||||||||||||||||| |||||||    
T  13949907 aacttatagcttatatgaaaacaatttgactttattttatctt 13949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 49219152 - 49219094
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||| ||| ||| ||||||||||||| |||| || |||||||||    
T  49219152 gaaaacaacttatagcttatatgaaaataatttgactttattttatattttgttataga 49219094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 54325094 - 54325152
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||| ||||||||||| ||| ||||| ||||||||||| ||||||| ||| |||||    
T  54325094 gaaaatagcttatagcttatatgaaaacagtttgactttattttatcttttgtaataga 54325152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 91 - 148
Target Start/End: Original strand, 6987671 - 6987728
Alignment:
Q  91 acttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttat 148  Q
    ||||||||||| |||||||||||| |||   ||||||||||| ||||||||| |||||    
T  6987671 acttaattgagtttatctactagcataagtgtttgtgagactgtttgggagagcttat 6987728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 10192297 - 10192241
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    ||||| |||||||| |||| ||| |||||||||||||||||  |||||| |||||||    
T  10192297 gaaaacaacttataacttatatgaaaacaatttgactttattctatcttttgttata 10192241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 76 - 152
Target Start/End: Complemental strand, 11264456 - 11264380
Alignment:
Q  76 agtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttatagaa 152  Q
    ||||||||| ||||  |||| |||||  ||||||||||| ||| ||| ||||||||| ||||||||| | |||||||    
T  11264456 agtctgtttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagcatatagaa 11264380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 29373944 - 29374016
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatat 222  Q
    ||||| || |||||||||| ||| | ||| |||||| |||| |||||||||||||||||  | ||||||||||    
T  29373944 gaaaacaaattatagcttatatgaatacattttgacattattttatcttctgttatagaaatagcttatatat 29374016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 1417277 - 1417221
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    ||||| ||||||| ||||| ||| ||||||||||||||||| ||||||| |||||||    
T  1417277 gaaaacaacttattgcttatatgaaaacaatttgactttattttatcttttgttata 1417221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 208
Target Start/End: Complemental strand, 35536117 - 35536062
Alignment:
Q  153 aataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    |||| |||||| |||| ||| ||||||||||||||||| ||||||| |||||||||    
T  35536117 aatagcttataacttatatgaaaacaatttgactttattttatcttatgttataga 35536062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 130
Target Start/End: Complemental strand, 431471 - 431413
Alignment:
Q  72 taagagtctgtttagattaacttaattgaggttatctactagcttaatcatttgtgaga 130  Q
    ||||||| |||||||||| ||||| |||||| ||||||||| | ||| |||||||||||    
T  431471 taagagtatgtttagattgacttatttgaggctatctactaacataaacatttgtgaga 431413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Original strand, 27481351 - 27481409
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||||||||| ||||||||| ||||||||  | ||||| | |||||||||    
T  27481351 gaaaataacttatagcttatatggaaacagtttgacttcgttttatcctttgttataga 27481409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 49060553 - 49060495
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||||||||| ||  ||| ||||||||||||| |||| || |||||||||    
T  49060553 gaaaataacttatagcttatataaaaataatttgactttattttattttttgttataga 49060495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 23918961 - 23918912
Alignment:
Q  159 ttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    |||||||||| ||| ||||||||||||||||| ||||||| ||| |||||    
T  23918961 ttatagcttatatgaaaacaatttgactttattttatcttttgtaataga 23918912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 222
Target Start/End: Original strand, 9527147 - 9527219
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttatagatttggcttatatat 222  Q
    ||||| ||||||||| ||| ||| ||||| |||||||||||  |||||| |||||||||| | || |||||||    
T  9527147 gaaaacaacttatagtttatatgaaaacagtttgactttattatatcttttgttatagatatagcgtatatat 9527219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 27548268 - 27548228
Alignment:
Q  158 cttatagcttaaatggaaacaatttgactttatgttatctt 198  Q
    ||||||||||||||| |||||||| |||||||| |||||||    
T  27548268 cttatagcttaaatgaaaacaattagactttattttatctt 27548228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 46056149 - 46056185
Alignment:
Q  223 tgataaatgcttaattaagttgtttatctaaccatgg 259  Q
    |||||||||||||||||||||||||||| || |||||    
T  46056149 tgataaatgcttaattaagttgtttatccaaacatgg 46056185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 197
Target Start/End: Complemental strand, 5550137 - 5550098
Alignment:
Q  158 cttatagcttaaatggaaacaatttgactttatgttatct 197  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  5550137 cttatagcttatatgaaaacaatttgactttatgttatct 5550098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 151 - 206
Target Start/End: Complemental strand, 22742378 - 22742323
Alignment:
Q  151 aaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttata 206  Q
    |||||| ||||||||||| ||| ||||||||||||||||| ||||| | |||||||    
T  22742378 aaaatagcttatagcttatatgaaaacaatttgactttattttatcctttgttata 22742323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 208
Target Start/End: Complemental strand, 4006727 - 4006669
Alignment:
Q  150 gaaaataacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||| ||||||||||||| ||  ||||||||||||||||| ||||| | |||||||||    
T  4006727 gaaaacaacttatagcttatataaaaacaatttgactttattttatcatttgttataga 4006669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 208
Target Start/End: Complemental strand, 29269885 - 29269851
Alignment:
Q  174 aaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||||||||||| |||||||||||||||||    
T  29269885 aaacaatttgactttattttatcttctgttataga 29269851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 281913 - 281962
Alignment:
Q  158 cttatagcttaaatggaaacaatttgactttatgttatcttctgttatag 207  Q
    ||||||||||| ||| |||||| |||||||||| ||||||| ||||||||    
T  281913 cttatagcttatatgaaaacaagttgactttattttatcttttgttatag 281962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 29274295 - 29274344
Alignment:
Q  159 ttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    |||||||||| ||| ||||||||||||||||| ||||||| || ||||||    
T  29274295 ttatagcttatatgaaaacaatttgactttattttatcttttgctataga 29274344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 208
Target Start/End: Original strand, 24836262 - 24836314
Alignment:
Q  156 aacttatagcttaaatggaaacaatttgactttatgttatcttctgttataga 208  Q
    ||||||||| ||| | | ||||||||||||||||| ||||||| |||||||||    
T  24836262 aacttatagtttatacgaaaacaatttgactttattttatcttttgttataga 24836314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 86 - 162
Target Start/End: Original strand, 26559164 - 26559239
Alignment:
Q  86 gattaacttaattgaggttatctactagcttaatcatttgtgagactctttgggagaccttatagaaaataacttat 162  Q
    |||||||||| ||||| ||| ||||| || ||| ||||||||||||| ||||| ||| ||||| ||||| |||||||    
T  26559164 gattaacttatttgagtttacctactggcataagcatttgtgagactgtttggaagaacttat-gaaaacaacttat 26559239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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