View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_131 (Length: 265)

Name: NF1305_low_131
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_131
NF1305_low_131
[»] chr4 (28 HSPs)
chr4 (111-258)||(55782537-55782687)
chr4 (111-258)||(55846717-55846867)
chr4 (174-257)||(805102-805186)
chr4 (161-256)||(14499247-14499345)
chr4 (174-257)||(50070714-50070797)
chr4 (211-250)||(10472504-10472543)
chr4 (211-250)||(13635745-13635784)
chr4 (176-250)||(29825716-29825790)
chr4 (211-250)||(49492532-49492571)
chr4 (211-250)||(55765488-55765527)
chr4 (211-250)||(1621882-1621921)
chr4 (211-250)||(15051156-15051195)
chr4 (211-250)||(30357814-30357853)
chr4 (211-250)||(30597706-30597745)
chr4 (211-250)||(35291568-35291607)
chr4 (211-250)||(36011850-36011889)
chr4 (211-250)||(38010148-38010187)
chr4 (211-250)||(46672446-46672485)
chr4 (211-250)||(49426077-49426116)
chr4 (211-250)||(51921285-51921324)
chr4 (211-250)||(1729635-1729674)
chr4 (211-250)||(11785981-11786020)
chr4 (211-250)||(11798148-11798187)
chr4 (211-250)||(20861587-20861626)
chr4 (211-250)||(53441327-53441366)
chr4 (210-243)||(16298935-16298968)
chr4 (211-243)||(24686586-24686618)
chr4 (211-243)||(25574148-25574180)
[»] chr2 (15 HSPs)
chr2 (174-257)||(27974253-27974337)
chr2 (174-257)||(28060782-28060866)
chr2 (174-258)||(21155433-21155518)
chr2 (174-253)||(44340258-44340337)
chr2 (211-250)||(9143592-9143631)
chr2 (211-250)||(15016586-15016625)
chr2 (211-250)||(18762874-18762913)
chr2 (211-250)||(34464718-34464757)
chr2 (211-250)||(39355042-39355081)
chr2 (211-250)||(2263580-2263619)
chr2 (211-250)||(7487274-7487313)
chr2 (211-250)||(8149838-8149877)
chr2 (211-250)||(8154462-8154501)
chr2 (211-260)||(41345079-41345127)
chr2 (211-243)||(5098730-5098762)
[»] chr1 (24 HSPs)
chr1 (178-257)||(41033912-41033992)
chr1 (174-254)||(37228326-37228407)
chr1 (191-258)||(19861697-19861763)
chr1 (211-250)||(49936957-49936996)
chr1 (211-250)||(50351810-50351849)
chr1 (211-250)||(6314122-6314161)
chr1 (211-250)||(11421601-11421640)
chr1 (211-250)||(19897780-19897819)
chr1 (211-250)||(20434742-20434781)
chr1 (211-250)||(24635933-24635972)
chr1 (211-250)||(43452549-43452588)
chr1 (211-250)||(48762351-48762390)
chr1 (191-257)||(15990689-15990754)
chr1 (211-250)||(4097928-4097967)
chr1 (211-250)||(18618842-18618881)
chr1 (211-250)||(21256792-21256831)
chr1 (211-250)||(23175542-23175581)
chr1 (211-250)||(25889048-25889087)
chr1 (211-250)||(28375471-28375510)
chr1 (211-249)||(34369668-34369706)
chr1 (211-259)||(25888914-25888960)
chr1 (211-243)||(13590481-13590513)
chr1 (211-243)||(33097419-33097451)
chr1 (211-243)||(51801753-51801785)
[»] scaffold0221 (1 HSPs)
scaffold0221 (161-257)||(20479-20578)
[»] chr8 (18 HSPs)
chr8 (174-254)||(40004716-40004796)
chr8 (174-258)||(42434528-42434612)
chr8 (174-257)||(17232843-17232925)
chr8 (211-250)||(9852277-9852316)
chr8 (211-250)||(34648148-34648187)
chr8 (211-250)||(10237361-10237400)
chr8 (211-250)||(15227037-15227076)
chr8 (211-250)||(19784278-19784317)
chr8 (211-250)||(23396484-23396523)
chr8 (211-250)||(30413921-30413960)
chr8 (211-250)||(41099189-41099228)
chr8 (211-250)||(41451112-41451151)
chr8 (211-250)||(43690647-43690686)
chr8 (211-250)||(1150043-1150082)
chr8 (211-250)||(34633341-34633380)
chr8 (211-250)||(40023282-40023321)
chr8 (211-243)||(2522881-2522913)
chr8 (211-243)||(40247305-40247337)
[»] chr5 (12 HSPs)
chr5 (174-257)||(25189817-25189901)
chr5 (174-253)||(16223430-16223509)
chr5 (211-250)||(3884055-3884094)
chr5 (211-250)||(30783442-30783481)
chr5 (211-250)||(13552990-13553029)
chr5 (211-250)||(14394475-14394514)
chr5 (211-250)||(14940376-14940415)
chr5 (211-250)||(15416671-15416710)
chr5 (211-250)||(26637857-26637896)
chr5 (211-259)||(3883920-3883967)
chr5 (211-243)||(16552659-16552691)
chr5 (211-243)||(33868169-33868201)
[»] scaffold0455 (1 HSPs)
scaffold0455 (174-253)||(10651-10730)
[»] chr6 (15 HSPs)
chr6 (174-253)||(28132745-28132824)
chr6 (172-262)||(18755653-18755743)
chr6 (174-253)||(22030107-22030186)
chr6 (211-250)||(30908659-30908698)
chr6 (211-250)||(31216669-31216708)
chr6 (211-250)||(1449549-1449588)
chr6 (211-250)||(1536916-1536955)
chr6 (211-250)||(6900810-6900849)
chr6 (211-250)||(7089089-7089128)
chr6 (211-262)||(1449676-1449726)
chr6 (211-250)||(15493181-15493220)
chr6 (211-257)||(15007526-15007572)
chr6 (211-243)||(27079950-27079982)
chr6 (211-255)||(30909443-30909486)
chr6 (172-215)||(32557103-32557147)
[»] scaffold0050 (1 HSPs)
scaffold0050 (165-255)||(20974-21067)
[»] scaffold1251 (1 HSPs)
scaffold1251 (174-258)||(399-480)
[»] scaffold0154 (1 HSPs)
scaffold0154 (174-257)||(37445-37528)
[»] chr3 (26 HSPs)
chr3 (174-257)||(40220751-40220833)
chr3 (211-250)||(9106274-9106313)
chr3 (211-250)||(30947931-30947970)
chr3 (211-250)||(33414033-33414072)
chr3 (211-250)||(3475427-3475466)
chr3 (211-250)||(6097704-6097743)
chr3 (211-250)||(19284678-19284717)
chr3 (211-250)||(41192370-41192409)
chr3 (211-250)||(46237778-46237817)
chr3 (211-250)||(47335039-47335078)
chr3 (211-250)||(51846800-51846839)
chr3 (211-250)||(54379170-54379209)
chr3 (174-227)||(1365373-1365426)
chr3 (205-257)||(8054963-8055014)
chr3 (211-250)||(2941946-2941985)
chr3 (211-250)||(9596000-9596039)
chr3 (211-250)||(26662558-26662597)
chr3 (211-250)||(26960633-26960672)
chr3 (211-250)||(34563367-34563406)
chr3 (211-261)||(9595863-9595912)
chr3 (174-231)||(17620772-17620830)
chr3 (211-257)||(33413899-33413945)
chr3 (211-257)||(47335166-47335216)
chr3 (211-263)||(19284805-19284856)
chr3 (211-243)||(32233005-32233037)
chr3 (211-243)||(51682022-51682054)
[»] chr7 (16 HSPs)
chr7 (173-258)||(25779669-25779754)
chr7 (211-250)||(16933264-16933303)
chr7 (211-250)||(16938647-16938686)
chr7 (213-250)||(24359878-24359915)
chr7 (211-250)||(763704-763743)
chr7 (211-250)||(20000694-20000733)
chr7 (211-250)||(30884242-30884281)
chr7 (211-250)||(31660076-31660115)
chr7 (211-250)||(41911129-41911168)
chr7 (211-250)||(46358527-46358566)
chr7 (211-250)||(47340153-47340192)
chr7 (211-243)||(5757400-5757432)
chr7 (211-259)||(34228598-34228645)
chr7 (211-243)||(39007669-39007701)
chr7 (211-243)||(44141271-44141303)
chr7 (211-263)||(47340281-47340332)
[»] scaffold0571 (1 HSPs)
scaffold0571 (211-250)||(696-735)
[»] scaffold0045 (1 HSPs)
scaffold0045 (211-250)||(33691-33730)
[»] scaffold0581 (1 HSPs)
scaffold0581 (211-250)||(8441-8480)
[»] scaffold0074 (1 HSPs)
scaffold0074 (211-250)||(24281-24320)
[»] scaffold0460 (1 HSPs)
scaffold0460 (211-243)||(1618-1650)


Alignment Details
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 55782537 - 55782687
Alignment:
Q  111 tgggatttcgttttggaaagaaatgaaaatagttgggaaaccaaatgggctttcgtttggtttg--gggtgtatgacaaaatgg-ttggggt-ttaggaa 206  Q
    |||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| | |  |     
T  55782537 tgggcttttgttttggagagaaatgaaaatagttgtgaaaccaaatgggctttcgtttggtttggagggtgtatgacaaaatggattggggtgtaattat 55782636  T
Q  207 gcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  55782637 gcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactcccc 55782687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 111 - 258
Target Start/End: Original strand, 55846717 - 55846867
Alignment:
Q  111 tgggatttcgttttggaaagaaatgaaaatagttgggaaaccaaatgggctttcgtttggtttg--gggtgtatgacaaaatgg-ttggggt-ttaggaa 206  Q
    |||| ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||| ||||||| | |  |     
T  55846717 tgggcttttgttttggagagaaatgaaaatagttgtgaaaccaaatgggctttcgtttggtttggagggtgtatgacaaaatggattggggtgtaattat 55846816  T
Q  207 gcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    |||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  55846817 gcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactcccc 55846867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 805186 - 805102
Alignment:
Q  174 ggggtgtatgacaaaatggttg-gggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  805186 ggggtgtatgacaaaatggttttgggtgtaggaagcaattatgcacggtgcataaggaaatggcttatgcaccataaccactccc 805102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 161 - 256
Target Start/End: Complemental strand, 14499345 - 14499247
Alignment:
Q  161 tttcgtttggtttgggg---tgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcc 256  Q
    |||||||||||||||||   ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  14499345 tttcgtttggtttgggggggtgtatgacaaaatgggttggggtgtaggaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactcc 14499247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 50070797 - 50070714
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||||||| ||||||| ||| ||| || ||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  50070797 ggggtgtatgaaaaaatgggttgaggtgtatgaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactccc 50070714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 10472543 - 10472504
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10472543 ttatgcacggtgcataaggaaatgacttatgcaccataac 10472504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 13635745 - 13635784
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13635745 ttatgcacggtgcataaggaaatgacttatgcaccataac 13635784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 250
Target Start/End: Complemental strand, 29825790 - 29825716
Alignment:
Q  176 ggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||| |||||||| ||| ||| || ||||||||||||||||||||||||||||||  |||||||||||||||    
T  29825790 ggtgtatggcaaaatgggttgaggtgtatgaagcaattatgcacggtgcataaggaaat-ccttatgcaccataac 29825716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 49492532 - 49492571
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49492532 ttatgcacggtgcataaggaaatgacttatgcaccataac 49492571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 55765527 - 55765488
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55765527 ttatgcacggtgcataaggaaatgacttatgcaccataac 55765488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 1621921 - 1621882
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1621921 ttatgcacggtgcataaggaaatggcttatgcaccataac 1621882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 15051156 - 15051195
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15051156 ttatgcacggtgcataaggaaataacttatgcaccataac 15051195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 30357853 - 30357814
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  30357853 ttatgcacggtgcataaggaaatgacttatgaaccataac 30357814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 30597745 - 30597706
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  30597745 ttatgcacggtgcataaggaaataacttatgcaccataac 30597706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 35291568 - 35291607
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  35291568 ttatgcacggtgcataaggaaataacttatgcaccataac 35291607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 36011889 - 36011850
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  36011889 ttatgcacggtgcataaggaaataacttatgcaccataac 36011850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 38010187 - 38010148
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  38010187 ttatgcatggtgcataaggaaatgacttatgcaccataac 38010148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 46672485 - 46672446
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  46672485 ttatgcacggtgcataaggaaataacttatgcaccataac 46672446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 49426077 - 49426116
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  49426077 ttatgcacggtgcataaggaaataacttatgcaccataac 49426116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 51921285 - 51921324
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  51921285 ttatgcacggtgcataaggaaataacttatgcaccataac 51921324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 1729635 - 1729674
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||| |||| ||||||||||||||||||||||    
T  1729635 ttatgcacggtgtataaagaaatgacttatgcaccataac 1729674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 11786020 - 11785981
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  11786020 ttatgcacggtgcataaggaaatggtttatgcaccataac 11785981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 11798187 - 11798148
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||  ||||||||||||||    
T  11798187 ttatgcacggtgcataaggaaatggtttatgcaccataac 11798148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 20861626 - 20861587
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  20861626 ttatgcacggcgcataaggaaatggcttatgcaccataac 20861587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 53441366 - 53441327
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  53441366 ttatgcacgatgcataaggaaataacttatgcaccataac 53441327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 210 - 243
Target Start/End: Complemental strand, 16298968 - 16298935
Alignment:
Q  210 attatgcacggtgcataaggaaatgacttatgca 243  Q
    |||||||| |||||||||||||||||||||||||    
T  16298968 attatgcagggtgcataaggaaatgacttatgca 16298935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 24686618 - 24686586
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  24686618 ttatgcagggtgcataaggaaatgacttatgca 24686586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 25574148 - 25574180
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  25574148 ttatgcagggtgcataaggaaatgacttatgca 25574180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 27974253 - 27974337
Alignment:
Q  174 ggggtgtatgacaaaatggttg-gggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27974253 ggggtgtatgacaaaatggttttgggtgtaggaagcaattatgcacggtgcataaggaaatggcttatgcaccataaccactccc 27974337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 28060782 - 28060866
Alignment:
Q  174 ggggtgtatgacaaaatggttg-gggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    |||||||||||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  28060782 ggggtgtatgacaaaatggttttgggtgtaggaagcaattatgcacggtgcataaggaaatggcttatgcaccataaccactccc 28060866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 21155518 - 21155433
Alignment:
Q  174 ggggtgtatgacaaaatggttgg-ggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    |||||||||||||||||| ||   ||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21155518 ggggtgtatgacaaaatgatttttggtgtaggaagcaattatgcacggtgcataaggaaatggcttatgcaccataaccactcccc 21155433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 44340337 - 44340258
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccac 253  Q
    ||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  44340337 ggggtgtatgacaaaatgggttgaggtgtaggaaacaattatgcacggtgcataagtaaat-ccttatgcaccataaccac 44340258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 9143631 - 9143592
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  9143631 ttatgcacggtgcataaggaaataacttatgcaccataac 9143592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 15016586 - 15016625
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15016586 ttatgcacggtgcataaggaaataacttatgcaccataac 15016625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 18762913 - 18762874
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  18762913 ttatgcacggtgcataaggaaataacttatgcaccataac 18762874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 34464757 - 34464718
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  34464757 ttatgcacggtgcataaggaaataacttatgcaccataac 34464718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 39355081 - 39355042
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  39355081 ttatgcacggtgcataaggaaataacttatgcaccataac 39355042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 2263619 - 2263580
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||| |||||| |||||||||||||||    
T  2263619 ttatgcacggtgcataaagaaatggcttatgcaccataac 2263580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 7487274 - 7487313
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  7487274 ttatgcacggtgcataaggaaatagcttatgcaccataac 7487313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 8149877 - 8149838
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  8149877 ttatgcacgatgcataaggaaatggcttatgcaccataac 8149838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 8154501 - 8154462
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  8154501 ttatgcacgatgcataaggaaatggcttatgcaccataac 8154462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 41345127 - 41345079
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccccaa 260  Q
    ||||||||||||||||||||  |  |||||||||||||||||||||||||    
T  41345127 ttatgcacggtgcataaggatttc-cttatgcaccataaccactccccaa 41345079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 5098762 - 5098730
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  5098762 ttatgcagggtgcataaggaaatgacttatgca 5098730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 178 - 257
Target Start/End: Original strand, 41033912 - 41033992
Alignment:
Q  178 tgtatgacaaaatggttg-gggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    |||||||||||||||||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41033912 tgtatgacaaaatggttttgggtgtaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 41033992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 37228326 - 37228407
Alignment:
Q  174 ggggtgtatgacaaaatggttg-gggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccact 254  Q
    |||||||||||||||||||||  |||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  37228326 ggggtgtatgacaaaatggttttgggtgtaggaagaaattatgcacggtgcataaggaaatggcttatgcaccataaccact 37228407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 191 - 258
Target Start/End: Original strand, 19861697 - 19861763
Alignment:
Q  191 ggttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    ||||| ||| |||||||||||||||||||||||||||||||||  |||||||||||||||||| ||||    
T  19861697 ggttgaggtgtaggaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccacacccc 19861763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 49936957 - 49936996
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49936957 ttatgcacggtgcataaggaaatgacttatgcaccataac 49936996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 50351849 - 50351810
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  50351849 ttatgcacggtgcataaggaaatgacttatgcaccataac 50351810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 6314161 - 6314122
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  6314161 ttatgcacggtgcataaggaaatggcttatgcaccataac 6314122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 11421640 - 11421601
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  11421640 ttatgcacggtgcataaggaaatgatttatgcaccataac 11421601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 19897780 - 19897819
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  19897780 ttatgcacggtgcataaggaaataacttatgcaccataac 19897819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 20434742 - 20434781
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  20434742 ttatgcacggtgcataaggaaatggcttatgcaccataac 20434781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 24635972 - 24635933
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  24635972 ttatgcacggtgcataaggaaataacttatgcaccataac 24635933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 43452588 - 43452549
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  43452588 ttatgcacggtgcataaggaaataacttatgcaccataac 43452549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 48762351 - 48762390
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  48762351 ttatgcacggtgcataaggaaataacttatgcaccataac 48762390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 191 - 257
Target Start/End: Complemental strand, 15990754 - 15990689
Alignment:
Q  191 ggttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||||| || |||| ||||||||| |||||||||||||||  |||||||| |||||||||||||    
T  15990754 ggttggggtgtatgaagtaattatgcatggtgcataaggaaat-ccttatgcatcataaccactccc 15990689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 4097928 - 4097967
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  4097928 ttatgcacggtgcataaggaaatagcttatgcaccataac 4097967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 18618881 - 18618842
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  18618881 ttatgcacggtgcataaggaaataatttatgcaccataac 18618842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 21256792 - 21256831
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  21256792 ttatgcacggtgcataagaaaatggcttatgcaccataac 21256831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 23175542 - 23175581
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||| ||||||||||||| |||||||||||||||    
T  23175542 ttatgcacggcgcataaggaaatggcttatgcaccataac 23175581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 25889048 - 25889087
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  25889048 ttatgcacggtgcataaggaaatagcttatgcaccataac 25889087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 28375510 - 28375471
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||| ||||| ||||||||||||||||    
T  28375510 ttatgcacggtgcataaagaaataacttatgcaccataac 28375471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 249
Target Start/End: Complemental strand, 34369706 - 34369668
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataa 249  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  34369706 ttatgcacggtgcataagaaaatggcttatgcaccataa 34369668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 25888960 - 25888914
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactcccca 259  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||    
T  25888960 ttatgcacggtgcataagga--ttccttatgcaccataaccactcccca 25888914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 13590513 - 13590481
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  13590513 ttatgcagggtgcataaggaaatgacttatgca 13590481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 33097451 - 33097419
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  33097451 ttatgcagggtgcataaggaaatgacttatgca 33097419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 51801753 - 51801785
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  51801753 ttatgcagggtgcataaggaaatgacttatgca 51801785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 20578 - 20479
Alignment:
Q  161 tttcgtttggtttgggg---tgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcc 256  Q
    |||||||||||||||||   ||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||    
T  20578 tttcgtttggtttgggggggtgtatgacaaaatgggttggggtgtaggaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactcc 20480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 254
Target Start/End: Complemental strand, 40004796 - 40004716
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccact 254  Q
    ||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  40004796 ggggtgtatgacaaaatggattggggtgtaagaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccact 40004716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 258
Target Start/End: Original strand, 42434528 - 42434612
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    ||||||||||||||||||| ||| ||| || ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  42434528 ggggtgtatgacaaaatgggttgaggtgtatgaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactcccc 42434612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 17232843 - 17232925
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||||||||||||||| ||| ||| ||||||||||||||||||||||||||| || ||  ||||||||||||||||||||||    
T  17232843 ggggtgtatgacaaaatgggttgaggtgtaggaagcaattatgcacggtgcataa-gatat-ccttatgcaccataaccactccc 17232925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 9852316 - 9852277
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9852316 ttatgcacggtgcataaggaaatgacttatgcaccataac 9852277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 34648148 - 34648187
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34648148 ttatgcacggtgcataaggaaatgacttatgcaccataac 34648187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 10237400 - 10237361
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  10237400 ttatgcacggtgcataaggaaataacttatgcaccataac 10237361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 15227076 - 15227037
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15227076 ttatgcacggtgcataaggaaataacttatgcaccataac 15227037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 19784317 - 19784278
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  19784317 ttatgcacggtgcataaggaaatggcttatgcaccataac 19784278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 23396523 - 23396484
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  23396523 ttatgcacggtgcataaggaaatggcttatgcaccataac 23396484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 30413960 - 30413921
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  30413960 ttatgcacggtgcataaggaaatgacttatgcagcataac 30413921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 41099228 - 41099189
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  41099228 ttatgcacggtgcataaggaaataacttatgcaccataac 41099189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 41451151 - 41451112
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  41451151 ttatgcacggtgcataaggaaatggcttatgcaccataac 41451112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 43690686 - 43690647
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  43690686 ttatgcacggtgcataaggaaataacttatgcaccataac 43690647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 1150043 - 1150082
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||| ||| ||||||||||||||||    
T  1150043 ttatgcacggtgcataagggaataacttatgcaccataac 1150082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 34633341 - 34633380
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||| ||||||||    
T  34633341 ttatgcacggtgcataaggaaataacttatgtaccataac 34633380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 40023282 - 40023321
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  40023282 ttatgcacggtgtataaggaaatggcttatgcaccataac 40023321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 2522913 - 2522881
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  2522913 ttatgcagggtgcataaggaaatgacttatgca 2522881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 40247305 - 40247337
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  40247305 ttatgcagggtgcataaggaaatgacttatgca 40247337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 174 - 257
Target Start/End: Complemental strand, 25189901 - 25189817
Alignment:
Q  174 ggggtgtatgacaaaa-tggtt-ggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    |||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  25189901 ggggtgtatgacaaaaatggtttggggtgtaggaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccactccc 25189817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 16223509 - 16223430
Alignment:
Q  174 ggggtgtatgacaaaatg-gttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccac 253  Q
    |||||||||||||||||| ||||  || |||||||||||||||||| ||||||||||||||  ||||||||| ||||||||    
T  16223509 ggggtgtatgacaaaatgagttgaagtgtaggaagcaattatgcactgtgcataaggaaat-ccttatgcactataaccac 16223430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 3884055 - 3884094
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  3884055 ttatgcacggtgcataaggaaatgacttatgcaccataac 3884094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 30783481 - 30783442
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30783481 ttatgcacggtgcataaggaaatgacttatgcaccataac 30783442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 13553029 - 13552990
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  13553029 ttatgcacggtgcataaggaaataacttatgcaccataac 13552990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 14394514 - 14394475
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  14394514 ttatgcacggtgcataaggaaataacttatgcaccataac 14394475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 14940376 - 14940415
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  14940376 ttatgcacggtgcataaggaaataacttatgcaccataac 14940415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 15416710 - 15416671
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  15416710 ttatgcacggtgcataaggaaataacttatgcaccataac 15416671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 26637857 - 26637896
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  26637857 ttatgcacggtgcataagaaaatggcttatgcaccataac 26637896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 3883967 - 3883920
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactcccca 259  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||    
T  3883967 ttatgcacggtgcataaggatttc-cttatgcaccataaccactcccca 3883920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 16552659 - 16552691
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  16552659 ttatgcatggtgcataaggaaatgacttatgca 16552691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 33868201 - 33868169
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  33868201 ttatgcagggtgcataaggaaatgacttatgca 33868169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0455 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0455
Description:

Target: scaffold0455; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 10651 - 10730
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccac 253  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  10651 ggggtgtatgacaaaatgggttgaggtgtaggaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccac 10730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 174 - 253
Target Start/End: Original strand, 28132745 - 28132824
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccac 253  Q
    ||||||||||||||||||| ||| ||| |||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  28132745 ggggtgtatgacaaaatgggttgaggtgtaggaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccac 28132824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 172 - 262
Target Start/End: Complemental strand, 18755743 - 18755653
Alignment:
Q  172 ttggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccccaaaa 262  Q
    ||||||||||||||| ||||| ||||||| || ||||||||||||||| |||||||||| | |  |||||||||||||||||||||||||||    
T  18755743 ttggggtgtatgacataatgggttggggtgtacgaagcaattatgcaccgtgcataagg-atttccttatgcaccataaccactccccaaaa 18755653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 253
Target Start/End: Complemental strand, 22030186 - 22030107
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccac 253  Q
    ||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||||| ||||  ||||||||||||||||||    
T  22030186 ggggtgtatgacaaaatgggttgaggtgtaggaaacaattatgcacggtgcataagtaaat-ccttatgcaccataaccac 22030107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 30908698 - 30908659
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30908698 ttatgcacggtgcataaggaaatgacttatgcaccataac 30908659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 31216708 - 31216669
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  31216708 ttatgcacggtgcataaggaaatgacttatgcaccataac 31216669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 1449588 - 1449549
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  1449588 ttatgcacggtgcataaggaaatggcttatgcaccataac 1449549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 1536916 - 1536955
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  1536916 ttatgcacggtgcataaggaaataacttatgcaccataac 1536955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 6900849 - 6900810
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  6900849 ttatgcacggtgcataaggaaataacttatgcaccataac 6900810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 7089128 - 7089089
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  7089128 ttatgcacggtgcataaggaaataacttatgcaccataac 7089089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 1449676 - 1449726
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccccaaaa 262  Q
    ||||||||||||||||||||  |  |||||||||||||||||||||||||||    
T  1449676 ttatgcacggtgcataaggatttt-cttatgcaccataaccactccccaaaa 1449726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 15493220 - 15493181
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  15493220 ttatgcacggtacataaggaaatggcttatgcaccataac 15493181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 15007572 - 15007526
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||| ||||||||||||||   ||||||||||||||||||||||    
T  15007572 ttatgcagggtgcataaggaaaatccttatgcaccataaccactccc 15007526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 27079950 - 27079982
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    |||||||||||||||||| ||||||||||||||    
T  27079950 ttatgcacggtgcataagaaaatgacttatgca 27079982  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 255
Target Start/End: Original strand, 30909443 - 30909486
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactc 255  Q
    ||||||||||||||||||| |||  ||||||||||||||||||||    
T  30909443 ttatgcacggtgcataagg-aattccttatgcaccataaccactc 30909486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 32557103 - 32557147
Alignment:
Q  172 ttggggtgtatgacaaaat-ggttggggtttaggaagcaattatg 215  Q
    ||||||||||||||||||| ||||||||| || ||||||||||||    
T  32557103 ttggggtgtatgacaaaatgggttggggtgtacgaagcaattatg 32557147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0050 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 165 - 255
Target Start/End: Complemental strand, 21067 - 20974
Alignment:
Q  165 gtttggtttgggg---tgtatgacaaaatggtt-ggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactc 255  Q
    |||||||||||||   ||||||||||||||||| ||||| ||||||||||||||||||||||||||||| | |  ||||||||||||||||||||    
T  21067 gtttggtttgggggagtgtatgacaaaatggtttggggtgtaggaagcaattatgcacggtgcataagg-attttcttatgcaccataaccactc 20974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1251 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold1251
Description:

Target: scaffold1251; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 258
Target Start/End: Complemental strand, 480 - 399
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    ||||||||||||||||||| ||||||| || |||| |||||||||| |||||||||||||    ||||||||||||||||||||||    
T  480 ggggtgtatgacaaaatgggttggggtgtatgaagtaattatgcacagtgcataaggaaa----ttatgcaccataaccactcccc 399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 37445 - 37528
Alignment:
Q  174 ggggtgtatgacaaaatggttggggtt-taggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||||||||||||||| | | ||| || ||||||||||||||||||||||||||||||  ||||||||||||||||| ||||    
T  37445 ggggtgtatgacaaaatgggttgagttgtatgaagcaattatgcacggtgcataaggaaat-ccttatgcaccataaccaatccc 37528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 174 - 257
Target Start/End: Original strand, 40220751 - 40220833
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||||||| ||||||| ||||||| ||||||||| |||||||||||||||||| ||||  ||||||||||||||||||||||    
T  40220751 ggggtgtatgaaaaaatggattggggtgtaggaagca-ttatgcacggtgcataagaaaatc-cttatgcaccataaccactccc 40220833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 9106313 - 9106274
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  9106313 ttatgcacggtgcataaggaaatgacttatgcaccataac 9106274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 30947931 - 30947970
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  30947931 ttatgcacggtgcataaggaaatgacttatgcaccataac 30947970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 33414033 - 33414072
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  33414033 ttatgcacggtgcataaggaaatgacttatgcaccataac 33414072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 3475427 - 3475466
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  3475427 ttatgcacggtgcataaggaaataacttatgcaccataac 3475466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 6097704 - 6097743
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  6097704 ttatgcacggtgcataaggaaataacttatgcaccataac 6097743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 19284717 - 19284678
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  19284717 ttatgcacggtgcataaggaaataacttatgcaccataac 19284678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 41192370 - 41192409
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||| ||||||||||||||||||||||||||||||||||    
T  41192370 ttatgtacggtgcataaggaaatgacttatgcaccataac 41192409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 46237778 - 46237817
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  46237778 ttatgcacggtgcataaggaaataacttatgcaccataac 46237817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 47335078 - 47335039
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  47335078 ttatgcacggtgcataaggaaataacttatgcaccataac 47335039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 51846800 - 51846839
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  51846800 ttatgcacggtgcataaggaaatggcttatgcaccataac 51846839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 54379209 - 54379170
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  54379209 ttatgcacggtgcataaggaaataacttatgcaccataac 54379170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 1365426 - 1365373
Alignment:
Q  174 ggggtgtatgacaaaatggttggggtttaggaagcaattatgcacggtgcataa 227  Q
    ||||||||||| ||||||| | |||| ||||||||||||||||| |||||||||    
T  1365426 ggggtgtatgataaaatgggttgggtgtaggaagcaattatgcatggtgcataa 1365373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 8055014 - 8054963
Alignment:
Q  205 aagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    |||||||||||||||||||||||| ||||   |||||||||||||||||||||    
T  8055014 aagcaattatgcacggtgcataagaaaat-ctttatgcaccataaccactccc 8054963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 2941946 - 2941985
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||| ||||||||||| ||||||||||||||||    
T  2941946 ttatgcacggtacataaggaaataacttatgcaccataac 2941985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 9596000 - 9596039
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  9596000 ttatgcacggtgcataaggaaatagcttatgcaccataac 9596039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 26662558 - 26662597
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  26662558 ttatgcacggtgcataaggaaatggcttatgcacaataac 26662597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 26960672 - 26960633
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| |||||| |||||||||    
T  26960672 ttatgcacggtgcataaggaaataacttatacaccataac 26960633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 34563367 - 34563406
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||| ||||| |||||||||||||||    
T  34563367 ttatgcacggtgcataagaaaatggcttatgcaccataac 34563406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 261
Target Start/End: Complemental strand, 9595912 - 9595863
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccccaaa 261  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||||    
T  9595912 ttatgcacggtgcataaggatttc-cttatgcaccataaccactccccaaa 9595863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 17620830 - 17620772
Alignment:
Q  174 ggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaa 231  Q
    ||||||||||||| ||||| ||  ||| || ||||||||||||||||||||||||||||    
T  17620830 ggggtgtatgacagaatggattcaggtgtacgaagcaattatgcacggtgcataaggaa 17620772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 33413945 - 33413899
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccc 257  Q
    ||||||||||||||||||| | |  ||||||||||||||||||||||    
T  33413945 ttatgcacggtgcataagggatttccttatgcaccataaccactccc 33413899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 257
Target Start/End: Original strand, 47335166 - 47335216
Alignment:
Q  211 ttatgcacggtgcataaggaaatga----cttatgcaccataaccactccc 257  Q
    |||||||||||||||||||||| ||    ||||||||||||||||||||||    
T  47335166 ttatgcacggtgcataaggaaaggatttccttatgcaccataaccactccc 47335216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 19284805 - 19284856
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccccaaaat 263  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||| ||||    
T  19284805 ttatgcacggtgcataaggatttc-cttatgcaccataaccactcccccaaat 19284856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 32233037 - 32233005
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  32233037 ttatgcagggtgcataaggaaatgacttatgca 32233005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 51682022 - 51682054
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  51682022 ttatgcagggtgcataaggaaatgacttatgca 51682054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 173 - 258
Target Start/End: Original strand, 25779669 - 25779754
Alignment:
Q  173 tggggtgtatgacaaaatgg-ttggggtttaggaagcaattatgcacggtgcataaggaaatgacttatgcaccataaccactcccc 258  Q
    |||||||||||||||||||| ||| ||| || ||| ||||||||||||||||||||||||||  |||||||||||  ||||||||||    
T  25779669 tggggtgtatgacaaaatgggttgaggtgtatgaatcaattatgcacggtgcataaggaaat-ccttatgcaccaataccactcccc 25779754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 16933264 - 16933303
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16933264 ttatgcacggtgcataaggaaatgacttatgcaccataac 16933303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 16938647 - 16938686
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  16938647 ttatgcacggtgcataaggaaatgacttatgcaccataac 16938686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 213 - 250
Target Start/End: Complemental strand, 24359915 - 24359878
Alignment:
Q  213 atgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||||||||||||||||||    
T  24359915 atgcacggtgcataaggaaatgacttatgcaccataac 24359878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 763743 - 763704
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  763743 ttatgcacggtgcataaggaaatggcttatgcaccataac 763704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 20000694 - 20000733
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||| |||||||||||||||||||||    
T  20000694 ttatgcacggtgcataagtaaatgacttatgcaccataac 20000733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 30884242 - 30884281
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  30884242 ttatgcacggtgcataaggaaataacttatgcaccataac 30884281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 31660115 - 31660076
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  31660115 ttatgcacggtgcataaggaaataacttatgcaccataac 31660076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 41911129 - 41911168
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  41911129 ttatgcacggtgcataaggaaataacttatgcaccataac 41911168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 46358566 - 46358527
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  46358566 ttatgcacggtgcataaggaaataacttatgcaccataac 46358527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 47340192 - 47340153
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||| |||| ||||||||||||||||    
T  47340192 ttatgcacggtgcataagaaaataacttatgcaccataac 47340153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 5757432 - 5757400
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    |||||||||||||||||||||||| ||||||||    
T  5757432 ttatgcacggtgcataaggaaatgtcttatgca 5757400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 259
Target Start/End: Complemental strand, 34228645 - 34228598
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactcccca 259  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||||    
T  34228645 ttatgcacggtgcataaggatttt-cttatgcaccataaccactcccca 34228598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 39007669 - 39007701
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  39007669 ttatgcagggtgcataaggaaatgacttatgca 39007701  T

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Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 44141271 - 44141303
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  44141271 ttatgcagggtgcataaggaaatgacttatgca 44141303  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 263
Target Start/End: Original strand, 47340281 - 47340332
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataaccactccccaaaat 263  Q
    ||||||||||||||||||||  |  ||||||||||||||||||||||| ||||    
T  47340281 ttatgcacggtgcataaggatttc-cttatgcaccataaccactcccctaaat 47340332  T

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Target: scaffold0571 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0571
Description:

Target: scaffold0571; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 696 - 735
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  696 ttatgcacggtgcataaggaaatggcttatgcaccataac 735  T

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Target: scaffold0045 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 33730 - 33691
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  33730 ttatgcacggtgcataaggaaatggcttatgcaccataac 33691  T

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Target: scaffold0581 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0581
Description:

Target: scaffold0581; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Original strand, 8441 - 8480
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    |||||||| ||||||||||||||| |||||||||||||||    
T  8441 ttatgcacagtgcataaggaaatggcttatgcaccataac 8480  T

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Target: scaffold0074 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 211 - 250
Target Start/End: Complemental strand, 24320 - 24281
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgcaccataac 250  Q
    ||||||||||| |||||||||||| |||||||||||||||    
T  24320 ttatgcacggtacataaggaaatggcttatgcaccataac 24281  T

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Target: scaffold0460 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0460
Description:

Target: scaffold0460; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 211 - 243
Target Start/End: Complemental strand, 1650 - 1618
Alignment:
Q  211 ttatgcacggtgcataaggaaatgacttatgca 243  Q
    ||||||| |||||||||||||||||||||||||    
T  1650 ttatgcagggtgcataaggaaatgacttatgca 1618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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