View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_136 (Length: 252)
Name: NF1305_low_136
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_136 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 23210690 - 23210450
Alignment:
| Q |
1 |
ttcaatttaaatattttattttctttaaattcttttgtgtttcgaaatagacgcacgcataggtcaaaagtctagttttgattaagtttgtgaaagaata |
100 |
Q |
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| T |
23210690 |
ttcaatttaaatattttattttctttaaattctt--gtgtttcgaaatagacccacgcataggtcaaaagtctagttttgattaagtttgtgaaagaata |
23210593 |
T |
|
| Q |
101 |
ataaatgtcatttctatttgttttgcaatgagatttctttttaagttttgtcaagtttgtgaaagaatagcaagtgtttgagaattgaataagaacccta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23210592 |
ataaatgtcatttctatttgttttgcaatgagatttctttttaagttttgtcaagtttgtgaaagaatagcaagtgtttgagaattgaataagaacccta |
23210493 |
T |
|
| Q |
201 |
accaactctttaactaagaaactcaaagaatgaatagtattat |
243 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23210492 |
accaactctttaactaagaaactcaaagaatgaatagtattat |
23210450 |
T |
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