View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_137 (Length: 251)
Name: NF1305_low_137
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_137 |
 | |
|
| [»] chr6 (2 HSPs) |
| |
|
| [»] chr4 (7 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 11 - 251
Target Start/End: Complemental strand, 21979997 - 21979757
Alignment:
| Q |
11 |
cacagactctaagaattctgtccattttgtgttcacctcttcaatttcaatcgatagattttgaatcggcagaagattctgcttcttcagtgaaccttaa |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21979997 |
cacacactctaagaattctgtccattttgtgttcacctcttcaatttcgatcgatagattttgaatcggcagaagattctgcttcttcagtgaaccttaa |
21979898 |
T |
|
| Q |
111 |
taannnnnnnattccctatcctcatgcttatattaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtct |
210 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21979897 |
taatttttttattccctatcctcatgcttatattaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtct |
21979798 |
T |
|
| Q |
211 |
actggacttcaaaaacaaatacctttgtctcctcttgattc |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21979797 |
actggacttcaaaaacaaatacctttgtctcctcttgattc |
21979757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 243
Target Start/End: Original strand, 21015667 - 21015766
Alignment:
| Q |
144 |
taaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctcct |
243 |
Q |
| |
|
|||| ||||||||||||| ||||||||||| ||| | ||||| ||||| ||||||| || || ||| || |||| ||||||||||||||||||||| |
|
|
| T |
21015667 |
taaatgttcatgtagagggtttatatttttgcaccatgattcaaacatctacctatggaatccatccactagagttcacaaacaaatacctttgtctcct |
21015766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 3e-29; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 142 - 251
Target Start/End: Complemental strand, 50251006 - 50250897
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| || || || || ||||| | ||||||||||||||||| |
|
|
| T |
50251006 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagcctctacctatggaatccatccaccgggcttcacatacaaatacctttgtctc |
50250907 |
T |
|
| Q |
242 |
ctcttgattc |
251 |
Q |
| |
|
| ||||||| |
|
|
| T |
50250906 |
attttgattc |
50250897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 37827210 - 37827109
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
|||||||||||| ||||||| ||| ||||||| ||| ||| || || ||||||||||||| || || |||||| |||| ||||||||||| ||||||| |
|
|
| T |
37827210 |
attaaaggttcaggtagagggtttgtatttttgcaccgttctttaaacatctacatatggaatccatccactggatttcacaaacaaatacccttgtctc |
37827111 |
T |
|
| Q |
242 |
ct |
243 |
Q |
| |
|
|| |
|
|
| T |
37827110 |
ct |
37827109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 48875705 - 48875806
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
||||||||||| || ||||| |||||| | || || ||||||||||| |||||| ||||||| || || || ||| |||| |||||||||||| |||||| |
|
|
| T |
48875705 |
attaaaggttcttgcagaggctttatactgttgcattgtttttcaagcctctacctatggaatccatccaccggatttcacaaacaaatacctatgtctc |
48875804 |
T |
|
| Q |
242 |
ct |
243 |
Q |
| |
|
|| |
|
|
| T |
48875805 |
ct |
48875806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 48891326 - 48891380
Alignment:
| Q |
197 |
tatggaacccgtctactggacttcaaaaacaaatacctttgtctcctcttgattc |
251 |
Q |
| |
|
||||||| || || ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
48891326 |
tatggaatccatccactggacttcacaaacaaatacctttgtctcctattgattc |
48891380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 48870401 - 48870502
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || ||| | ||| |||||| ||||||| || || || ||| |||| |||||||||||||||| || |
|
|
| T |
48870401 |
attaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtc |
48870500 |
T |
|
| Q |
242 |
ct |
243 |
Q |
| |
|
|| |
|
|
| T |
48870501 |
ct |
48870502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 48886087 - 48886188
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
|||||||||||||||||||| |||||||| || || ||| | ||| |||||| ||||||| || || || ||| |||| |||||||||||||||| || |
|
|
| T |
48886087 |
attaaaggttcatgtagaggctttatattattgcattgtgctccaaccctctacctatggaatccatccaccggatttcacaaacaaatacctttgtgtc |
48886186 |
T |
|
| Q |
242 |
ct |
243 |
Q |
| |
|
|| |
|
|
| T |
48886187 |
ct |
48886188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 243
Target Start/End: Original strand, 7877585 - 7877686
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
|||| ||||||||| ||||| |||||| |||| ||||| | ||| ||||||||||||| || || |||||| || |||||||||||||| |||||| |
|
|
| T |
7877585 |
attagaggttcatgcagagggtttatacttttgtactgtcatccaatcatctacatatggaatccatccactggatttaaaaaacaaatacctgtgtctc |
7877684 |
T |
|
| Q |
242 |
ct |
243 |
Q |
| |
|
|| |
|
|
| T |
7877685 |
ct |
7877686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 243
Target Start/End: Complemental strand, 47452123 - 47452022
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaatacctttgtctc |
241 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||| ||||| ||||||||||||| || || |||||| |||| ||||||||||||||| ||| |
|
|
| T |
47452123 |
attaaaggttcatgtagagggtttatacttttaagttgttcttcaaacatctacatatggaatccatccactggagttcacaaacaaatacctttgcctc |
47452024 |
T |
|
| Q |
242 |
ct |
243 |
Q |
| |
|
|| |
|
|
| T |
47452023 |
ct |
47452022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 236
Target Start/End: Complemental strand, 11015735 - 11015641
Alignment:
| Q |
142 |
attaaaggttcatgtagaggatttatatttttccactgtttttcaagactctacatatggaacccgtctactggacttcaaaaacaaataccttt |
236 |
Q |
| |
|
|||||| |||||||||||||||||||| |||| |||| ||||| ||||| ||||||| || || ||||||| ||| |||||||||||||| |
|
|
| T |
11015735 |
attaaaagttcatgtagaggatttatagttttgacttgttcttcaaacatctacctatggaatccatcaactggacatcacaaacaaataccttt |
11015641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University