View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_139 (Length: 251)
Name: NF1305_low_139
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_139 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 57 - 239
Target Start/End: Original strand, 33338524 - 33338706
Alignment:
| Q |
57 |
aagcataaattaatgcaaacctaaattgtaaaggtacaaagtacaacttttaaaaatttaaaataactctaatgacaggtggaatagttggctatgaaat |
156 |
Q |
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| T |
33338524 |
aagcataaattaatgcaaacctaaattgtaaaggtacaaagtacaacttttaaaaatttaaaataactctaatgacaagtggaatagttggctatgaaat |
33338623 |
T |
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| Q |
157 |
ttgtgctcatgtatcgaaatagtagactgtaagaaagctatttcatcaatgaaaaataacaaataagaaaagcttagaatatt |
239 |
Q |
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| T |
33338624 |
ttgtgctcatgtatcgaaatagtaggctgtaagaaagctatttcatcaatgaaaaataacaaataaaaaaagcttagaatatt |
33338706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 33337888 - 33337950
Alignment:
| Q |
1 |
ctgccaatgaagattgccgcttctgatgaaaccagtcccataaagtcacaccccagaagcata |
63 |
Q |
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| T |
33337888 |
ctgccaatgaagattgccgcttctgatgaaaccagtcccataaagtcacaccccagaagcata |
33337950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 63 - 131
Target Start/End: Original strand, 22610743 - 22610811
Alignment:
| Q |
63 |
aaattaatgcaaacctaaattgtaaaggtacaaagtacaacttttaaaaatttaaaataactctaatga |
131 |
Q |
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| T |
22610743 |
aaattaatgcaaaccataactgtataggtacaaagtacaaccattaaaaatctaaaataactctaatga |
22610811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 164
Target Start/End: Complemental strand, 45271169 - 45271077
Alignment:
| Q |
72 |
caaacctaaattgtaaaggtacaaagtacaacttttaaaaatttaaaataactctaatgacaggtggaatagttggctatgaaatttgtgctc |
164 |
Q |
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| T |
45271169 |
caaaccaaaattttataggtacaaagtactaggattaaaaatctaaaataactcaaatgagatgtggaaaagttggatgcgtaatttgtgctc |
45271077 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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