View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_142 (Length: 250)
Name: NF1305_low_142
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_142 |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 22741634 - 22741398
Alignment:
| Q |
1 |
tgtgatgtattttcggaaaactttaaactcaactctacccttttctcgttcttcatcttgaacaagttgtccttttggctcaactgtgtcgtctaacttt |
100 |
Q |
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|||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |
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| T |
22741634 |
tgtgatgtatttccagaacactttaaactcaactctacccttttctcgttcttcatcttgaacaagttgtccttttggcttaactgtgtcatctaacttt |
22741535 |
T |
|
| Q |
101 |
ccttttcgatcacctatgttttccacttcttgctcaagttcaaaatcacttaataaaactgtgtcttcctcggtaatactcgattttttaaatgtattcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22741534 |
ccttttcgatcacctatgttttccacttcttgctcaagttcaaaatcactcgataaaactgtgtcttcctcggtaatactcgattttttaaatgtattcc |
22741435 |
T |
|
| Q |
201 |
ctctctctaaggacttaactgaagacaacgctgctct |
237 |
Q |
| |
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||||||||||||||||||||||| |||| ||||||| |
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| T |
22741434 |
ttctctctaaggacttaactgaaggcaacactgctct |
22741398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22726161 - 22726397
Alignment:
| Q |
1 |
tgtgatgtattttcggaaaactttaaactcaactctacccttttctcgttcttcatcttgaacaagttgtccttttggctcaactgtgtcgtctaacttt |
100 |
Q |
| |
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|||||||||||| ||| ||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||| ||| |||| ||| ||| ||| |
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| T |
22726161 |
tgtgatgtatttcaagaacactttaaacccaactctgcccttttctcgttcttcgtcttgaacaagttgtccttttccgtcagatgtgccgtgtaatttt |
22726260 |
T |
|
| Q |
101 |
ccttttcgatcacctatgttttccacttcttgctcaagttcaaaatcacttaataaaactgtgtcttcctcggtaatactcgattttttaaatgtattcc |
200 |
Q |
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|||||| ||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
22726261 |
cctttttgatcatctatattttccacttcttgctcaagttcagaatcacttaataaaactgtgtcttcctccataatactcgattttttaaatgtattcc |
22726360 |
T |
|
| Q |
201 |
ctctctctaaggacttaactgaagacaacgctgctct |
237 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |
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| T |
22726361 |
ttctctctaaggacttaactgaagacaatgctgctct |
22726397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 22669522 - 22669758
Alignment:
| Q |
1 |
tgtgatgtattttcggaaaactttaaactcaactctacccttttctcgttcttcatcttgaacaagttgtccttttggctcaactgtgtcgtctaacttt |
100 |
Q |
| |
|
|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||| ||||||| |
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| T |
22669522 |
tgtgatgtatttcaagaacactttaaactcaactctacccttttctcgttcttcatcttgaacaagttgtcctttcccgtcaggtgtgccgtgtaacttt |
22669621 |
T |
|
| Q |
101 |
ccttttcgatcacctatgttttccacttcttgctcaagttcaaaatcacttaataaaactgtgtcttcctcggtaatactcgattttttaaatgtattcc |
200 |
Q |
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|||||| |||| |||||||||| | |||||||||||||||| |||||||| | |||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
22669622 |
ccttttttatcatctatgttttcaaattcttgctcaagttcagaatcacttgacaaaactgtgtcttcgtccgtaatactcgattttttaaatgtattcc |
22669721 |
T |
|
| Q |
201 |
ctctctctaaggacttaactgaagacaacgctgctct |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| |
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|
| T |
22669722 |
ttctctctaaggacttaactgaagacaacgcggctct |
22669758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 44 - 83
Target Start/End: Original strand, 22749545 - 22749584
Alignment:
| Q |
44 |
tctcgttcttcatcttgaacaagttgtccttttggctcaa |
83 |
Q |
| |
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|||| |||||| |||||||||||||||||||||||||||| |
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| T |
22749545 |
tctctttcttcttcttgaacaagttgtccttttggctcaa |
22749584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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