View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_143 (Length: 247)
Name: NF1305_low_143
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_143 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 45 - 247
Target Start/End: Original strand, 42037599 - 42037796
Alignment:
| Q |
45 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagagnnnnnnnnnntattcactcacgggtttta |
144 |
Q |
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| T |
42037599 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagaaagaaaa-----aatcactcacgggtttta |
42037693 |
T |
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| Q |
145 |
agagttttgttaactcttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnnntacacataagtattgataatataataag |
244 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||| |
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| T |
42037694 |
agagttttgttaactcttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagtattgataatataataag |
42037793 |
T |
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