View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_145 (Length: 240)
Name: NF1305_low_145
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_145 |
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Alignment Details
Target: chr2 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 38502983 - 38503117
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
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| T |
38502983 |
gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttctgccatcaaacgtcaatcgacacgctgccttcccgctgctttcaatcgc |
38503082 |
T |
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| Q |
112 |
cactgtcatcatctgactcaccttgctgttctgtg |
146 |
Q |
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|||||||||||| |||||||||||||||||||||| |
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| T |
38503083 |
cactgtcatcatttgactcaccttgctgttctgtg |
38503117 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 46597126 - 46596992
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
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| T |
46597126 |
gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaattgacacgctgccttcccgctgctttcaatcgc |
46597027 |
T |
|
| Q |
112 |
cactgtcatcatctgactcaccttgctgttctgtg |
146 |
Q |
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| T |
46597026 |
cactgtcatcatctgactcaccttgctgttctgtg |
46596992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 6678897 - 6679031
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
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| T |
6678897 |
gacatagacacgcgctctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaatcgacatgttgccttcccgctgctttcaatcgc |
6678996 |
T |
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| Q |
112 |
cactgtcatcatctgactcaccttgctgttctgtg |
146 |
Q |
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| T |
6678997 |
cactgtcatcatctaactcaccttgctgttctgtg |
6679031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 27 - 146
Target Start/End: Complemental strand, 22506047 - 22505928
Alignment:
| Q |
27 |
tctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgccactgtcatcatctg |
126 |
Q |
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| T |
22506047 |
tctggaattagaatcagacggcgccgatctgctttccgccatcaaacgtcaattgacatgttgccttcccgttgctttcaatcgccactgtcatcatctt |
22505948 |
T |
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| Q |
127 |
actcaccttgctgttctgtg |
146 |
Q |
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|||||||||||||||||||| |
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| T |
22505947 |
actcaccttgctgttctgtg |
22505928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 50959495 - 50959609
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
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|||||||| || || |||||||||||||||||| ||| | |||| |||| ||||||||| |||||| || ||| ||||||||||||||||||||| |
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| T |
50959495 |
gacatagacacgcgctctggaattagaatcagacagcgccgatctgctttccgccatcaaacatcaatcgacgcgctgccttcccgctgctttcaatcat |
50959594 |
T |
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| Q |
112 |
cactgtcatcatctg |
126 |
Q |
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||| ||||||||||| |
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| T |
50959595 |
caccgtcatcatctg |
50959609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 18380 - 18514
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
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| T |
18380 |
gacatagacacgcgctctggaattagaatcagacggccccgatctgctttccgccatcaaacgtcaatcgacacgctgccttcccgctgctttcaatcgc |
18479 |
T |
|
| Q |
112 |
cactgtcatcatctgactcaccttgctgttctgtg |
146 |
Q |
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||||||||||||| ||||||||| ||||||||||| |
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| T |
18480 |
cactgtcatcatccgactcacctcgctgttctgtg |
18514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 27 - 146
Target Start/End: Original strand, 21291782 - 21291901
Alignment:
| Q |
27 |
tctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgccactgtcatcatctg |
126 |
Q |
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|||||||||||||||||| ||| | |||| |||| |||||||||||||||| ||| || ||||| || |||||||||||||||| |||||||||||| |
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| T |
21291782 |
tctggaattagaatcagacggccccgatctgctttccgccatcaaacgtcaatcgacatgctgccttaccactgctttcaatcgccattgtcatcatctg |
21291881 |
T |
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| Q |
127 |
actcaccttgctgttctgtg |
146 |
Q |
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|||||||||| ||||||||| |
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| T |
21291882 |
actcaccttgttgttctgtg |
21291901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 71; Significance: 3e-32; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 146
Target Start/End: Complemental strand, 44267386 - 44267252
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
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|||||||| || || |||||||||||||||||| ||| | |||| |||| |||||||||||||||| || |||||||||||||| |||||||||||| |
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| T |
44267386 |
gacatagacacgcgctctggaattagaatcagacggcaccgatctgctttccgccatcaaacgtcaatcgacgcgccgccttcccgcggctttcaatcgc |
44267287 |
T |
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| Q |
112 |
cactgtcatcatctgactcaccttgctgttctgtg |
146 |
Q |
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|||||||||||| |||||||||||| ||||||||| |
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| T |
44267286 |
cactgtcatcatttgactcaccttgttgttctgtg |
44267252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 12 - 146
Target Start/End: Original strand, 6997533 - 6997667
Alignment:
| Q |
12 |
gacatagagacacgatctggaattagaatcagagggcgtcaatcttcttttttccatcaaacgtcaatcaacacgccgccttcccgctgctttcaatcgc |
111 |
Q |
| |
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|||||||| || || |||||||||||||||||| || | |||| |||| |||| |||||||||||||| |||||||||||||||||||||| || | |
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| T |
6997533 |
gacatagacacgcgctctggaattagaatcagactgcaccgatctgctttccgccattaaacgtcaatcaacgcgccgccttcccgctgctttcagtcac |
6997632 |
T |
|
| Q |
112 |
cactgtcatcatctgactcaccttgctgttctgtg |
146 |
Q |
| |
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||||||||||||||||||||||||||| ||||||| |
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| T |
6997633 |
cactgtcatcatctgactcaccttgctcttctgtg |
6997667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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