View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_15 (Length: 604)

Name: NF1305_low_15
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_15
NF1305_low_15
[»] chr1 (3 HSPs)
chr1 (183-576)||(50457007-50457400)
chr1 (20-161)||(50456870-50457010)
chr1 (341-392)||(40243124-40243175)
[»] chr6 (3 HSPs)
chr6 (347-392)||(3859902-3859947)
chr6 (256-371)||(515979-516097)
chr6 (314-388)||(29621344-29621420)
[»] scaffold0041 (1 HSPs)
scaffold0041 (332-378)||(37555-37600)
[»] chr7 (1 HSPs)
chr7 (346-396)||(40355314-40355364)
[»] chr8 (1 HSPs)
chr8 (346-379)||(2986973-2987006)
[»] chr5 (1 HSPs)
chr5 (256-343)||(917174-917263)
[»] chr4 (1 HSPs)
chr4 (346-374)||(35683075-35683103)


Alignment Details
Target: chr1 (Bit Score: 362; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 183 - 576
Target Start/End: Original strand, 50457007 - 50457400
Alignment:
Q  183 ctgtactattacttgattgttattccatattgttattattgtctgcatttagtatgctattaattttgaggcaaatagtcatgtttgttcctgaatgcgt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  50457007 ctgtactattacttgattgttattccatattgttattattgtctgcatttagtatgctattaattttgaggcaaatagtcatttttgttcctgaatgcgt 50457106  T
Q  283 aacgagtagtcacaattgtcctcgatgtagcgaaattataaaatagtcatgattgtacactctttagtcaaaatagtatttgatgttaaaatgtttcctt 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50457107 aacgagtagtcacaattgtcctcgatgtagcgaaattataaaatagtcatgattgtacactctttagtcaaaatagtatttgatgttaaaatgtttcctt 50457206  T
Q  383 taatgccatgacctaaagtgtggtgagttaacatacagagggttaaaatggggaataggcatgattgatgtaagcatttcttgaacagaaataatagcat 482  Q
    ||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  50457207 taacgccatgacctaaagtgtggtgagttaacatacggagggttaaaacggggaataggcatgattgatgtaagcatttcttgatcagaaataatagcat 50457306  T
Q  483 ttgttcttgtcatagattattttgattaatggagtgcacgagcagttactattttgtaattttgctacattggaggatcattgtggctattctt 576  Q
    ||||||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50457307 ttgttctcgccatagattattttgactaatggagtgcacgagcagttactattttgtaattttgctacattggaggatcattgtggctattctt 50457400  T

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Target: chr1; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 20 - 161
Target Start/End: Original strand, 50456870 - 50457010
Alignment:
Q  20 ataattctataagaggtcaaagataagagagagaaaaaactaagataacataagctaaagctatacatgttacaactaaagtaacgaaatttgagtgatt 119  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  50456870 ataattctataagaggtcaaagataagagaaaaaaaaaactaagataacataagctaaagctatacatgttacaactaaagtaacgaaatttgagtga-t 50456968  T
Q  120 ttattatgctgttaaacagtaccatttcaataacaaaactgt 161  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  50456969 ttattatgctgttaaacagtaccatttcaataacaaaactgt 50457010  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 341 - 392
Target Start/End: Original strand, 40243124 - 40243175
Alignment:
Q  341 actctttagtcaaaatagtatttgatgttaaaatgtttcctttaatgccatg 392  Q
    |||| ||| |||||||||| ||| ||||||||||||||||||||||| ||||    
T  40243124 actcgttaatcaaaatagtctttaatgttaaaatgtttcctttaatgtcatg 40243175  T

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Target: chr6 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 347 - 392
Target Start/End: Original strand, 3859902 - 3859947
Alignment:
Q  347 tagtcaaaatagtatttgatgttaaaatgtttcctttaatgccatg 392  Q
    ||||||||||||||||||| ||||||||||||||||||| ||||||    
T  3859902 tagtcaaaatagtatttgacgttaaaatgtttcctttaacgccatg 3859947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 371
Target Start/End: Complemental strand, 516097 - 515979
Alignment:
Q  256 aatagtcatgtttgttcctgaatgcgtaacgagtagtcacaattgt-cctcgatgtagcgaaattataaaatagtc-atgattgtacac-tctttagtca 352  Q
    ||||||||| || || |||||||| |||||||||||||||||  ||  || |||||| |||||||  ||||||||| |||||||| ||| || |||||||    
T  516097 aatagtcattttggtccctgaatgtgtaacgagtagtcacaacagtaacttgatgtatcgaaattccaaaatagtcaatgattgtgcacttcgttagtca 515998  T
Q  353 aaatagtatttgatgttaa 371  Q
    ||||||| | |||||||||    
T  515997 aaatagtctctgatgttaa 515979  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 314 - 388
Target Start/End: Complemental strand, 29621420 - 29621344
Alignment:
Q  314 gaaattataaaatagtc-atgattgtacactct-ttagtcaaaatagtatttgatgttaaaatgtttcctttaatgc 388  Q
    ||||||||||||||||| ||||||||| ||| | ||||||||||||||   | | ||||| ||||||||||||||||    
T  29621420 gaaattataaaatagtccatgattgtaaactttgttagtcaaaatagtcactaacgttaatatgtttcctttaatgc 29621344  T

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Target: scaffold0041 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 332 - 378
Target Start/End: Complemental strand, 37600 - 37555
Alignment:
Q  332 tgattgtacactctttagtcaaaatagtatttgatgttaaaatgttt 378  Q
    ||||||| |||| |||||| |||||||||||||||||||||||||||    
T  37600 tgattgttcact-tttagtaaaaatagtatttgatgttaaaatgttt 37555  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 396
Target Start/End: Original strand, 40355314 - 40355364
Alignment:
Q  346 ttagtcaaaatagtatttgatgttaaaatgtttcctttaatgccatgacct 396  Q
    ||||| |||||||| | ||| ||||||||||||||||||| ||||||||||    
T  40355314 ttagttaaaatagtctctgacgttaaaatgtttcctttaacgccatgacct 40355364  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 379
Target Start/End: Original strand, 2986973 - 2987006
Alignment:
Q  346 ttagtcaaaatagtatttgatgttaaaatgtttc 379  Q
    |||||||||||||||||| |||||||||||||||    
T  2986973 ttagtcaaaatagtatttaatgttaaaatgtttc 2987006  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 256 - 343
Target Start/End: Complemental strand, 917263 - 917174
Alignment:
Q  256 aatagtcatgtttgttcctgaatgcgtaacgagtagtcacaattgt-cctcgatgtagcgaaattataaaatagtc-atgattgtacact 343  Q
    ||||||||| || ||||||||||| ||||  | |||||||||| || |||| ||||| ||||||| ||||||||||  ||||||||||||    
T  917263 aatagtcattttggttcctgaatgtgtaaatattagtcacaatcgtccctcaatgtatcgaaattttaaaatagtctttgattgtacact 917174  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 346 - 374
Target Start/End: Original strand, 35683075 - 35683103
Alignment:
Q  346 ttagtcaaaatagtatttgatgttaaaat 374  Q
    |||||||||||||||||||||||||||||    
T  35683075 ttagtcaaaatagtatttgatgttaaaat 35683103  T

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