View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_151 (Length: 229)

Name: NF1305_low_151
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_151
NF1305_low_151
[»] chr6 (8 HSPs)
chr6 (74-229)||(23998197-23998352)
chr6 (74-229)||(16380550-16380705)
chr6 (74-229)||(16648146-16648301)
chr6 (74-229)||(1646991-1647146)
chr6 (74-229)||(14130418-14130573)
chr6 (74-223)||(16099958-16100113)
chr6 (145-229)||(23025923-23026007)
chr6 (87-229)||(14643664-14643803)
[»] scaffold0225 (1 HSPs)
scaffold0225 (74-229)||(25510-25665)
[»] scaffold0162 (2 HSPs)
scaffold0162 (74-229)||(15024-15179)
scaffold0162 (74-229)||(11209-11364)
[»] chr8 (11 HSPs)
chr8 (74-229)||(16875570-16875725)
chr8 (74-229)||(21848812-21848967)
chr8 (82-229)||(20650830-20650977)
chr8 (74-229)||(22436454-22436609)
chr8 (82-227)||(23902323-23902468)
chr8 (74-229)||(23155517-23155670)
chr8 (74-229)||(21195015-21195169)
chr8 (134-217)||(16414302-16414385)
chr8 (96-219)||(19869866-19869989)
chr8 (109-197)||(24631173-24631261)
chr8 (110-184)||(23887215-23887289)
[»] chr7 (13 HSPs)
chr7 (74-229)||(7825974-7826129)
chr7 (74-229)||(27105815-27105970)
chr7 (74-229)||(27172355-27172510)
chr7 (74-229)||(17925724-17925879)
chr7 (84-229)||(13378969-13379112)
chr7 (74-229)||(4442002-4442157)
chr7 (74-229)||(13458109-13458264)
chr7 (85-223)||(15716950-15717088)
chr7 (87-192)||(17143354-17143459)
chr7 (96-228)||(39188-39320)
chr7 (87-144)||(12204904-12204961)
chr7 (87-144)||(14262349-14262406)
chr7 (92-184)||(48813338-48813430)
[»] chr5 (5 HSPs)
chr5 (74-229)||(23507683-23507838)
chr5 (74-229)||(24583209-24583364)
chr5 (74-229)||(21935402-21935557)
chr5 (87-218)||(20250509-20250640)
chr5 (110-142)||(21337595-21337627)
[»] chr3 (8 HSPs)
chr3 (74-229)||(8272670-8272825)
chr3 (74-229)||(30139520-30139675)
chr3 (74-229)||(30149071-30149226)
chr3 (74-229)||(13965623-13965778)
chr3 (74-229)||(15611817-15611972)
chr3 (74-229)||(15948741-15948896)
chr3 (74-229)||(6151124-6151279)
chr3 (74-214)||(25768032-25768172)
[»] chr1 (7 HSPs)
chr1 (74-229)||(20829496-20829651)
chr1 (74-229)||(20927154-20927309)
chr1 (74-229)||(20527153-20527308)
chr1 (82-229)||(41215960-41216107)
chr1 (126-229)||(22133860-22133963)
chr1 (89-214)||(21200998-21201123)
chr1 (171-229)||(35930929-35930987)
[»] scaffold0076 (1 HSPs)
scaffold0076 (74-229)||(42374-42529)
[»] chr2 (8 HSPs)
chr2 (74-229)||(24829760-24829915)
chr2 (74-229)||(22279821-22279976)
chr2 (74-229)||(24568240-24568395)
chr2 (74-229)||(25130325-25130480)
chr2 (74-229)||(22760141-22760296)
chr2 (87-206)||(10037927-10038046)
chr2 (87-206)||(10098312-10098431)
chr2 (87-144)||(23112465-23112522)
[»] scaffold0302 (2 HSPs)
scaffold0302 (74-229)||(327-482)
scaffold0302 (74-229)||(7269-7424)
[»] chr4 (5 HSPs)
chr4 (74-229)||(15291190-15291345)
chr4 (75-214)||(12340912-12341051)
chr4 (87-144)||(15323315-15323372)
chr4 (111-184)||(14696235-14696308)
chr4 (87-144)||(15072457-15072514)
[»] scaffold0266 (1 HSPs)
scaffold0266 (82-229)||(7896-8043)
[»] scaffold0124 (1 HSPs)
scaffold0124 (74-229)||(5841-5998)
[»] scaffold0022 (1 HSPs)
scaffold0022 (77-226)||(8864-9013)
[»] scaffold0218 (2 HSPs)
scaffold0218 (74-229)||(1987-2142)
scaffold0218 (74-229)||(26443-26598)
[»] scaffold0170 (1 HSPs)
scaffold0170 (74-229)||(34201-34356)
[»] scaffold0077 (1 HSPs)
scaffold0077 (74-229)||(26301-26456)
[»] scaffold0008 (2 HSPs)
scaffold0008 (74-229)||(132524-132679)
scaffold0008 (129-229)||(25938-26038)
[»] scaffold1488 (1 HSPs)
scaffold1488 (74-229)||(838-993)
[»] scaffold0692 (1 HSPs)
scaffold0692 (74-229)||(1919-2074)
[»] scaffold0561 (1 HSPs)
scaffold0561 (74-229)||(7040-7195)
[»] scaffold0369 (1 HSPs)
scaffold0369 (102-229)||(6888-7015)
[»] scaffold0120 (1 HSPs)
scaffold0120 (74-229)||(24292-24447)
[»] scaffold0387 (1 HSPs)
scaffold0387 (74-220)||(16174-16320)
[»] scaffold0610 (1 HSPs)
scaffold0610 (82-229)||(6964-7111)
[»] scaffold0467 (1 HSPs)
scaffold0467 (74-229)||(1656-1811)
[»] scaffold0092 (1 HSPs)
scaffold0092 (74-229)||(223-378)
[»] scaffold0021 (3 HSPs)
scaffold0021 (74-229)||(21882-22037)
scaffold0021 (74-229)||(31458-31613)
scaffold0021 (74-182)||(7330-7438)
[»] scaffold0876 (1 HSPs)
scaffold0876 (82-229)||(981-1128)
[»] scaffold0462 (1 HSPs)
scaffold0462 (136-229)||(2117-2210)
[»] scaffold0635 (1 HSPs)
scaffold0635 (87-206)||(9024-9143)
[»] scaffold0719 (1 HSPs)
scaffold0719 (156-218)||(4785-4847)
[»] scaffold0585 (1 HSPs)
scaffold0585 (87-144)||(5209-5266)
[»] scaffold0058 (1 HSPs)
scaffold0058 (165-228)||(76630-76693)
[»] scaffold0465 (1 HSPs)
scaffold0465 (182-216)||(13673-13707)
[»] scaffold0083 (1 HSPs)
scaffold0083 (110-184)||(9114-9188)
[»] scaffold0827 (1 HSPs)
scaffold0827 (111-184)||(5259-5332)
[»] scaffold0730 (1 HSPs)
scaffold0730 (87-144)||(121-178)
[»] scaffold0029 (1 HSPs)
scaffold0029 (87-144)||(114688-114745)
[»] scaffold0026 (1 HSPs)
scaffold0026 (87-144)||(50939-50996)
[»] scaffold0016 (1 HSPs)
scaffold0016 (87-144)||(176464-176521)
[»] scaffold0270 (2 HSPs)
scaffold0270 (110-142)||(6023-6055)
scaffold0270 (110-142)||(13153-13185)


Alignment Details
Target: chr6 (Bit Score: 152; Significance: 1e-80; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 23998197 - 23998352
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23998197 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 23998296  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23998297 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 23998352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 16380705 - 16380550
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16380705 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 16380606  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16380605 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 16380550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 16648301 - 16648146
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16648301 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 16648202  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16648201 tagtgtccatacctcgttcggaacgcagttttggatatatcttctgcctttactct 16648146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 1647146 - 1646991
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1647146 caccacaaaacggtccagataaggatgaaatattctattcatatattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 1647047  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1647046 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgccttcactct 1646991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 14130418 - 14130573
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||| ||||||||||||| |||||||||| |||||||| ||||||||| || |||| |||| |||||||| ||||||| ||||||||    
T  14130418 caccacaaaacggtccaaataaggatgaaatgttctattcatatattccatgaagacacctagcacattggataatccaaatgacatcacataatactca 14130517  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||| |||||    
T  14130518 tagtatccatacctcgttcgaaacgcggttttggatatatcttccgccttcactct 14130573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 74 - 223
Target Start/End: Original strand, 16099958 - 16100113
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataa------agacacctggcgcattagatactccaaatggcatcacagaa 167  Q
    ||||||| ||||||||| ||| |||||||||||||||||||| || |||||||      ||||||||||| ||||||| |||||||||||||| ||| ||    
T  16099958 caccacaaaacggtccaaatatggatgaaatattctattcatatactccataaagataaagacacctggcacattagacactccaaatggcattacataa 16100057  T
Q  168 tactcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctt 223  Q
    |||||||||||||||||||||||||| ||||  |||||||||||||||||||||||    
T  16100058 tactcatagtgtccatacctcgttcgtaacgatgttttggatatatcttccgcctt 16100113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 23026007 - 23025923
Alignment:
Q  145 atactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||||||||| |||||    
T  23026007 atactccaaatggcatcacagaatactcatagtgtccatacctcgttcgagacgtagttttggatatatcttccgccttcactct 23025923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 229
Target Start/End: Complemental strand, 14643803 - 14643664
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacc 186  Q
    |||| ||||||||| || ||||||||||| |||||||| ||||||||  |||||| ||  || |||||||||||||||||||| ||  |||||||||| |    
T  14643803 tccaaataaggatggaagattctattcatatattccatgaagacaccatgcgcatcagtaacaccaaatggcatcacagaata-tc--agtgtccatatc 14643707  T
Q  187 tcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    | |||||||| ||||| ||||| ||||| |||| ||| |||||    
T  14643706 tagttcggaatgcagtcttggaaatatcctccgtcttcactct 14643664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0225 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: scaffold0225
Description:

Target: scaffold0225; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 25510 - 25665
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25510 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 25609  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25610 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 25665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: scaffold0162
Description:

Target: scaffold0162; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 15024 - 15179
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15024 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 15123  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15124 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 15179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0162; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 11364 - 11209
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||    
T  11364 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagacactccaaatggcatcaaagaatactca 11265  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| |||||||| || ||||||||||||||||||||||| |||||    
T  11264 tagtgtccataccttgttcggaatgcggttttggatatatcttccgccttcactct 11209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 16875725 - 16875570
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16875725 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 16875626  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  16875625 tagtgtccatacctcgttcggaacgcagttttggatatatcttctgcctttactct 16875570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 21848967 - 21848812
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21848967 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 21848868  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||    
T  21848867 tagtgtccataccttgttcggaacgcagttttggatatatctttcgcctttactct 21848812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 20650977 - 20650830
Alignment:
Q  82 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 181  Q
    |||||||||||||||||| ||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20650977 aacggtccagataaggataaaatattctattcatatactctatgaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 20650878  T
Q  182 atacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||    
T  20650877 atacctcgttcggaacgctgttttggatatatcttctgcctttactct 20650830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 22436454 - 22436609
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  22436454 caccacaaaacggtccagataaggatgaaatattctattcatttattccattaagacacctggcgcattggatactccaaatggcatcacagaatactca 22436553  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    || ||||||||||| ||||||||||| |||||||||||||||||||| || |||||    
T  22436554 tactgtccataccttgttcggaacgcggttttggatatatcttccgctttcactct 22436609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 82 - 227
Target Start/End: Original strand, 23902323 - 23902468
Alignment:
Q  82 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 181  Q
    ||||||||||| |||||||||||||||||||||| |||||||| ||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||    
T  23902323 aacggtccagaaaaggatgaaatattctattcatatattccatgaagacacctagtgcattggatactccaaatggcatcacagaatactcatagtgtcc 23902422  T
Q  182 atacctcgttcggaacgcagttttggatatatcttccgcctttact 227  Q
    || ||||||| ||||||| |||||||||||||||||| ||||||||    
T  23902423 atgcctcgtttggaacgcggttttggatatatcttccacctttact 23902468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 23155670 - 23155517
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |||||||| ||||||||| ||||||| | | |||||||||||||||||||||||||     
T  23155670 caccacaaaacggtccaaataaggatgaaatattctattcatatattccatgaagacacctagcgcattgggtgctccaaatggcatcacagaatactc- 23155572  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
     ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  23155571 -agtgtccatacctcgttcggaacgcggttttggatatatcttccgccttcactct 23155517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 21195169 - 21195015
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| |||  ||||||| ||||| ||||||||||| |||||||| ||||||||    
T  21195169 caccacaaaacggtccagataaggatgaaatattctattcatatattccatgaagt-acctggcacattatatactccaaattgcatcacaaaatactca 21195071  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| ||||||||| | ||||||||||||||||||||||| |||||    
T  21195070 tagtgtccataccttgttcggaacacggttttggatatatcttccgccttcactct 21195015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 16414302 - 16414385
Alignment:
Q  134 tggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttc 217  Q
    ||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||||    
T  16414302 tggcgcattggatattccaaatggcatcacagaatactcatagtgtccataccttgttcggaatgcggttttggatatatcttc 16414385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 219
Target Start/End: Original strand, 19869866 - 19869989
Alignment:
Q  96 ggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcgga 195  Q
    ||||| || ||||| ||||| || |||||||| || |||||||| || || |||||||| |||||||| ||||||||||| || ||||| |  |||| ||    
T  19869866 ggatggaaaattctgttcatatactccataaacactcctggcgcgttggacactccaaaaggcatcactgaatactcataatgaccataacgggttctga 19869965  T
Q  196 acgcagttttggatatatcttccg 219  Q
    | ||||| || |||||||||||||    
T  19869966 aggcagtcttcgatatatcttccg 19869989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 109 - 197
Target Start/End: Complemental strand, 24631261 - 24631173
Alignment:
Q  109 tattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaac 197  Q
    ||||||||||||||||||| |  ||| || ||||||  || ||||||| ||| ||||||||||||||||| | |||||| |||| ||||    
T  24631261 tattcatgtattccataaataatcctagcacattagtcacaccaaatgacattacagaatactcatagtgactatacctagttcagaac 24631173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Original strand, 23887215 - 23887289
Alignment:
Q  110 attcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccata 184  Q
    ||||||||| |||||||| ||| ||||||||||||  || || || |||||||| |||||||| || ||||||||    
T  23887215 attcatgtactccataaacacatctggcgcattagtaacaccgaaaggcatcactgaatactcgtaatgtccata 23887289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 7825974 - 7826129
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  7825974 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 7826073  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7826074 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 7826129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 27105970 - 27105815
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27105970 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 27105871  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27105870 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 27105815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 27172355 - 27172510
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27172355 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 27172454  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27172455 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 27172510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 17925724 - 17925879
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||| ||| |||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  17925724 caccacaaaacggtctagaaaaggatgaaatattctattcatatattccatgaagacacctggcgcattggatactccaaatggcatcacagaatactca 17925823  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||| |||| ||||| ||||||||||||||||||| ||| |||||    
T  17925824 tagtgtccatacctcattcgaaacgcggttttggatatatcttccgtcttcactct 17925879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 84 - 229
Target Start/End: Original strand, 13378969 - 13379112
Alignment:
Q  84 cggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccat 183  Q
    |||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||    
T  13378969 cggtccagataaggatgaaatattctattcatatatttcatgaagacacctggcgcattggatactccaaatggcatcacagaatactc--agtgtccat 13379066  T
Q  184 acctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||| ||||||||||||||||||||||| |||||    
T  13379067 acctcgttcggaacgcggttttggatatatcttccgccttcactct 13379112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 4442002 - 4442157
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||| ||||||| |||||| ||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||     
T  4442002 caccacaaaacggtccagaaaaggatggaatattatattcatatattccatgaagacacctggcgcattggatactccgaatggcatcacagaatactct 4442101  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||| |||||||||  |||||||| |||||||||||||||||||||||||||||    
T  4442102 tagtgttcatacctcgaccggaacgcggttttggatatatcttccgcctttactct 4442157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 13458109 - 13458264
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||| ||| || ||||||| ||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  13458109 caccacaaaacgatcctgaaaaggatggaatgttctattcatatattccatgaagacacctggcgcattggatactccaaatgacatcacaaaatactca 13458208  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| ||||||||| | |||| ||||||||||| |||||| |||||    
T  13458209 tagtgtccataccttgttcggaacacggtttcggatatatctttcgccttcactct 13458264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 15717088 - 15716950
Alignment:
Q  85 ggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccata 184  Q
    |||||||| ||||||| |||||||||||||| |||||||| |||||||  ||| |||||| ||  ||||||||||| |||||||| |||||||| |||||    
T  15717088 ggtccagaaaaggatggaatattctattcatatattccatgaagacactaggcacattagttagaccaaatggcattacagaatattcatagtgaccata 15716989  T
Q  185 cctcgttcggaacgcagttttggatatatcttccgcctt 223  Q
     || |||||||||||||||||||||||||| ||||||||    
T  15716988 tctagttcggaacgcagttttggatatatcctccgcctt 15716950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 87 - 192
Target Start/End: Complemental strand, 17143459 - 17143354
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacc 186  Q
    |||| ||||||||| || ||||||||||| |||||||| |||||||| |||| |||||  || ||||||| |||| ||||||| ||||||||||||||||    
T  17143459 tccaaataaggatggaagattctattcatatattccatgaagacaccgggcgtattagtcacaccaaatgacatcgcagaatattcatagtgtccatacc 17143360  T
Q  187 tcgttc 192  Q
    ||||||    
T  17143359 tcgttc 17143354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 96 - 228
Target Start/End: Complemental strand, 39320 - 39188
Alignment:
Q  96 ggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcgga 195  Q
    ||||| || ||||| ||||| || |||||||| || |||||||| || || |||||||| |||||||| ||||||||||| || ||||| |  |||| ||    
T  39320 ggatggaaaattctgttcatatactccataaaaactcctggcgcgttggacactccaaaaggcatcaccgaatactcataatgaccataacgggttctga 39221  T
Q  196 acgcagttttggatatatcttccgcctttactc 228  Q
    | ||||| ||  |||||||||||| ||| ||||    
T  39220 aggcagtcttcaatatatcttccgacttcactc 39188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 12204961 - 12204904
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| ||| || |||||||||||||| |||||||| ||||| ||||||||||    
T  12204961 tccagataagcatggaaaattctattcatgtactccataaacacaccaggcgcattag 12204904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 14262406 - 14262349
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| ||| || ||||||||||| || |||||||| ||||| ||||||||||    
T  14262406 tccagataagcatggaaaattctattcatatactccataaacacaccaggcgcattag 14262349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 92 - 184
Target Start/End: Complemental strand, 48813430 - 48813338
Alignment:
Q  92 ataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccata 184  Q
    ||||| |||||| || | ||||||||| |||||||| |||| |||||||||||  || || || |||||||| ||||| || || ||||||||    
T  48813430 ataagcatgaaaaatacaattcatgtactccataaacacacttggcgcattagtaacaccgaaaggcatcactgaatattcgtaatgtccata 48813338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 3e-78; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 23507683 - 23507838
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  23507683 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 23507782  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23507783 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 23507838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 24583209 - 24583364
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24583209 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 24583308  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  24583309 tagtgtccatacctcgttcggaacgcagttttggatatatcttttgcctttactct 24583364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 21935557 - 21935402
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21935557 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 21935458  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  21935457 tagtgtccataccttgttcggaacgcagttttggatatatcttctgcctttactct 21935402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 218
Target Start/End: Complemental strand, 20250640 - 20250509
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacc 186  Q
    |||| ||||||||| || || |||||||| ||||||||||||  ||||| | | |||| ||| ||||||||||| | | |||||||||| ||||||||||    
T  20250640 tccaaataaggatggaaaatcctattcatatattccataaagttacctgacacgttagttacaccaaatggcataataaaatactcataatgtccatacc 20250541  T
Q  187 tcgttcggaacgcagttttggatatatcttcc 218  Q
    | ||||| |||||||| || || |||||||||    
T  20250540 ttgttcgaaacgcagtcttagaaatatcttcc 20250509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Complemental strand, 21337627 - 21337595
Alignment:
Q  110 attcatgtattccataaagacacctggcgcatt 142  Q
    |||||||||||||||||| ||||||||||||||    
T  21337627 attcatgtattccataaacacacctggcgcatt 21337595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 8272825 - 8272670
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8272825 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 8272726  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8272725 tagtgtccatacctcgttcggaacgcagttttggatatatcttctgcctttactct 8272670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 30139520 - 30139675
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30139520 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 30139619  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30139620 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 30139675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 30149071 - 30149226
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30149071 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 30149170  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30149171 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 30149226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 13965778 - 13965623
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  13965778 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattggatactccaaatggcatcacagaatactca 13965679  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  13965678 tagtgtccatacctcgttcggaacgcagttttggatatatctaccgcctttactct 13965623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 15611817 - 15611972
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15611817 caccacaaaacggtccagataaggatgaaatattctattcatatattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 15611916  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  15611917 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgccttcactct 15611972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 15948896 - 15948741
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| | ||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||    
T  15948896 caccacaaatcggtccaaataaggatgaaatattctattcatatattccataaagacacctggcgcattggatactccaaatggcatcacggaatactca 15948797  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  15948796 tagtgtccatacctcgttcggaacgcggttttggatatatcttccgcctttactct 15948741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 6151279 - 6151124
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||| |||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  6151279 caccacaaaacggtctagataaggatgaaatattttattcatatactccataaagacacctggcgcattagatactccaaatggcatcacaaaatactca 6151180  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||    
T  6151179 tagtgtccatacctcgttcggaacacagttttggatatatcttctgccttcactct 6151124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 74 - 214
Target Start/End: Original strand, 25768032 - 25768172
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||    
T  25768032 caccacaaaacggtccagataaggatgaaatattctattcatatattccatgaagacacctggcgaattagatactccgaatggcatcacagaatactca 25768131  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatc 214  Q
    |||||||||||||| ||| ||||||| ||||||||||||||    
T  25768132 tagtgtccataccttgtttggaacgcggttttggatatatc 25768172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 20829651 - 20829496
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20829651 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 20829552  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20829551 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 20829496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 20927154 - 20927309
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20927154 caccacaaaactgtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 20927253  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  20927254 tagtgtccatacctcgttcggaacgcggttttggatatatcttccgcctttactct 20927309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 20527153 - 20527308
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  20527153 caccacaaaacggtccagataaggatgaaatattctattcatgtattctataaagacacctggtgcattagatactccaaatggcatcacagaatactca 20527252  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||| || ||||||||| ||||||| ||||| |||||    
T  20527253 tagtgtccatacctcgttcggaatgcggttttggatttatcttctgccttcactct 20527308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 41216107 - 41215960
Alignment:
Q  82 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 181  Q
    ||||||||||| |||||||||||||||||||||| |||| ||| || |||||||||||||| |||||||||||||||||||||||||||||||||| |||    
T  41216107 aacggtccagaaaaggatgaaatattctattcatatattgcatgaaaacacctggcgcattggatactccaaatggcatcacagaatactcatagtttcc 41216008  T
Q  182 atacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||| |||||||||||||||| | |||| |||||    
T  41216007 atacctcgttcggaacgcggttttggatatatcttacaccttcactct 41215960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 126 - 229
Target Start/End: Complemental strand, 22133963 - 22133860
Alignment:
Q  126 aagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgccttta 225  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||| || ||||||||||||||||||||||    
T  22133963 aagacacctggcgcattggatactccaaatggcatcacagaatactcatagtgtccatacctcgttcataacgcggtcttggatatatcttccgccttta 22133864  T
Q  226 ctct 229  Q
    ||||    
T  22133863 ctct 22133860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 21201123 - 21200998
Alignment:
Q  89 cagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctc 188  Q
    ||||||||||||||||||||||||||| |||||||| |||||||  |||| |||||  || | |||||||||||||||||| |||||||| ||||| |||    
T  21201123 cagataaggatgaaatattctattcatatattccatgaagacactcggcgtattagtcacactaaatggcatcacagaatattcatagtgaccatatctc 21201024  T
Q  189 gttcggaacgcagttttggatatatc 214  Q
    ||||||||||||||||||||||||||    
T  21201023 gttcggaacgcagttttggatatatc 21200998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 35930987 - 35930929
Alignment:
Q  171 tcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||  ||||||||||||||||||||||| |||||    
T  35930987 tcatagtgtccatacctcgttcggaacgtggttttggatatatcttccgccttcactct 35930929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 144; Significance: 7e-76; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 42374 - 42529
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  42374 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctagcgcattagatactccaaatggcatcacaaaatactca 42473  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42474 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 42529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 24829915 - 24829760
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24829915 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 24829816  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  24829815 tagtgtccatacctcgttcgaaacgcggttttggatatatcttccgcctttactct 24829760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 22279821 - 22279976
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  22279821 caccacaaaacggtccagataaggataaaatattctattcatgtattccataaagacacatggcgcattagatactccaaatggcatcacagaatactca 22279920  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| ||||||||||||| ||| | |||||||||    
T  22279921 tagtgtccatacctcgttcggaacgctgttttggatatatattcagtctttactct 22279976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 24568395 - 24568240
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||  ||||||||||||||||||||||||||||||||||||    
T  24568395 caccacaaaacggtccagataaggatgaaatattctattcatatactccatgaagacacctgatgcattagatactccaaatggcatcacagaatactca 24568296  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| ||| ||||||  ||||||||||||||||||||||| |||||    
T  24568295 tagtgtccataccttgtttggaacgtggttttggatatatcttccgccttcactct 24568240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 25130325 - 25130480
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| | ||||||||  |||||||||||||||||||||| |||||||  ||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  25130325 caccacaaagcggtccaggaaaggatgaaatattctattcatatattccaggaagacacctggcgcattggatactccaaatggcatcatagaatactca 25130424  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  25130425 tagtgtccatacctcgttcggaacgcggttttggatatatcttccgccttcactct 25130480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 22760296 - 22760141
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||| ||||||||||||||||||||||| || ||||| ||||||||| ||||||  ||||||||||||||||||||||||||||||    
T  22760296 caccacaaaacggtccaggtaaggatgaaatattctattcatatactccatgaagacacctagcgcatcggatactccaaatggcatcacagaatactca 22760197  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| |||  |||| | ||||||||||||||||||||||| |||||    
T  22760196 tagtgtccataccttgttttgaacacggttttggatatatcttccgccttcactct 22760141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 10038046 - 10037927
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacc 186  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||||  |||||||||  || ||||||| ||||||| | || |||||||| |||||||    
T  10038046 tccaaataaggatggaagattctattcatgtattccatgaagacaccaagcgcattagtcacaccaaatgacatcacaaagtattcatagtgcccatacc 10037947  T
Q  187 tcgttcggaacgcagttttg 206  Q
    ||||||| || |||||||||    
T  10037946 tcgttcgaaatgcagttttg 10037927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 206
Target Start/End: Complemental strand, 10098431 - 10098312
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacc 186  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||||  |||||||||  || ||||||| ||||||| | || |||||||| |||||||    
T  10098431 tccaaataaggatggaagattctattcatgtattccatgaagacaccaagcgcattagtcacaccaaatgacatcacaaagtattcatagtgcccatacc 10098332  T
Q  187 tcgttcggaacgcagttttg 206  Q
    ||||||| || |||||||||    
T  10098331 tcgttcgaaatgcagttttg 10098312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 23112465 - 23112522
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| ||| || |||||||||||||| |||||||| ||||  ||||||||||    
T  23112465 tccagataagcatggaaaattctattcatgtactccataaacacactaggcgcattag 23112522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 327 - 482
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  327 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaaaacacctggcgcattagatactccaaatgacatcacagaatactca 426  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  427 tagtgtccatacctcgttcggaacgcggttttggatatatcttccgcctttactct 482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 7269 - 7424
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||    
T  7269 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaaaacacctggcgcattagatactccaaatgacatcacagaatactca 7368  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  7369 tagtgtccatacctcgttcggaacgcggttttggatatatcttccgcctttactct 7424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 140; Significance: 2e-73; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 15291345 - 15291190
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15291345 caccacaaaatggtccagataaggatgaaatattttattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 15291246  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  15291245 tagtgtccatacctcgttcggaacgcagttttggatatatcttctgcctttactct 15291190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 12341051 - 12340912
Alignment:
Q  75 accacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcat 174  Q
    |||||| ||| ||||||| ||||||| ||||| |||||||| |||||||| |||||||||||||||||||  ||||||||||||||||||||||||||||    
T  12341051 accacaaaacagtccagaaaaggatggaatatcctattcatatattccatgaagacacctggcgcattagtcactccaaatggcatcacagaatactcat 12340952  T
Q  175 agtgtccatacctcgttcggaacgcagttttggatatatc 214  Q
    ||||||||| ||  ||||||||||| ||||||||||||||    
T  12340951 agtgtccattccctgttcggaacgcggttttggatatatc 12340912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 15323315 - 15323372
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| ||| || ||||||||||||||||||||||| ||||| ||||||||||    
T  15323315 tccagataagcatggaaaattctattcatgtattccataaacacaccaggcgcattag 15323372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 14696235 - 14696308
Alignment:
Q  111 ttcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccata 184  Q
    |||||||| |||||||| |||||||||||||| |  || ||||| |||||||| ||||| | ||| ||||||||    
T  14696235 ttcatgtactccataaacacacctggcgcatttgtaacaccaaaaggcatcactgaatattaataatgtccata 14696308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 15072457 - 15072514
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| ||| || | |||||||||||| |||||||| ||||| ||||||||||    
T  15072457 tccagataagcatggaaaactctattcatgtactccataaacacaccaggcgcattag 15072514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0266 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: scaffold0266
Description:

Target: scaffold0266; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 8043 - 7896
Alignment:
Q  82 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  8043 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactcatagtgtcc 7944  T
Q  182 atacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||    
T  7943 atacctcgttcggaacgcggttttggatatatctttcgcctttactct 7896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 5998 - 5841
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattct-attcatgtattcca-taaagacacctggcgcattagatactccaaatggcatcacagaatact 171  Q
    ||||||| |||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  5998 caccacaaaacggtccagataaggatgaaatattcttattcatgtatttcaataaagacacctggcgcattagatactccaaatggcatcacagaatact 5899  T
Q  172 catagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  5898 catagtgtccatacctcgttcggaacgcagttttggatatatcttctgcctttactct 5841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 77 - 226
Target Start/End: Complemental strand, 9013 - 8864
Alignment:
Q  77 cacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatag 176  Q
    |||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  9013 cacaaaacgatccagataaggatgaaatattctattcatgtatcccataaagacacctggtgcattagatactccaaatggcatcacagaatactcatag 8914  T
Q  177 tgtccatacctcgttcggaacgcagttttggatatatcttccgcctttac 226  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  8913 tgtccatacctcgttcgaaacgcggttttggatatatcttccgcctttac 8864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 2142 - 1987
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  2142 caccacaaaatggtccagataaggatgaaatattctattcatttattccataaagacacctggtgcattagatactccaaatggcatcacagaatactca 2043  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||    
T  2042 tagtgtctatacctcgttcggaatgcggttttggatatatcttccgccttcactct 1987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0218; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 26443 - 26598
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  26443 caccacaaaacggtccagaaaaggatgaaatattctattcatatattccatgaagacacctggcgcattagatactctaaatgacatcacagaatactca 26542  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| |||||||| || || |||||||||||||||||||| |||||    
T  26543 tagtgtccataccttgttcggaaagcggtattggatatatcttccgccttcactct 26598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 34201 - 34356
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34201 caccacaaaacggtccagataaggatgaaatattctattcatatactccatgaagacacctggcgcattggatactccaaatggcatcacagaatactca 34300  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||| ||||| ||||||| |||||||||||||||||||||    
T  34301 tagtgtccatacctcgttcgaaacgcggttttgggtatatcttccgcctttactct 34356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 26456 - 26301
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||    
T  26456 caccacaaaacggtccagataaggatgaaatactctattcatgcattccagaaagacacctggcgcattagatactccaaatggcatcacaaaatactca 26357  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||    
T  26356 tagtgtccatacctcgttcggaacgcggttttggatatctcttccgccttcactct 26301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 132679 - 132524
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||    
T  132679 caccacaaaacagtccagataaggataaaatattctattcatgtattccataaagacaccgggcgcattagatactccaaatggcatcacagagtactca 132580  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||| |||||||||||||| |||| |||||||||||| |||||||||||    
T  132579 tagtgtccatatctcgttcggaacgcggtttgggatatatcttcagcctttactct 132524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0008; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 129 - 229
Target Start/End: Original strand, 25938 - 26038
Alignment:
Q  129 acacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactc 228  Q
    ||||||||||||||  |||||| |||||||||||||||||||||||||||||||||| ||||| ||||||| ||| ||||||||||||||||||| ||||    
T  25938 acacctggcgcattgcatactctaaatggcatcacagaatactcatagtgtccatacttcgtttggaacgcggttatggatatatcttccgccttcactc 26037  T
Q  229 t 229  Q
    |    
T  26038 t 26038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1488 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold1488
Description:

Target: scaffold1488; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 993 - 838
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| || |||||| |||||||||||||||||||||||| |||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||    
T  993 caccacaaaatggtccaaataaggatgaaatattctattcatatattccatgaagacaactggcgcattggatactccaaatggcatcacagaatactca 894  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  893 tagtgttcatacctcgttcggaacacagttttggatatatcttccgccttcactct 838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0692 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0692
Description:

Target: scaffold0692; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 2074 - 1919
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||| |||||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||||||||||||||||||| |||||||||    
T  2074 caccacaaaacagtccagataaggatgaaatattctattcatatactccatgaagacacctggtgcattagatactccaaatggcatcaccgaatactca 1975  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||| || |||||| |||||||||||||||||||||||||||||    
T  1974 tagtgtccatacctcgatcagaacgcggttttggatatatcttccgcctttactct 1919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0561 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0561
Description:

Target: scaffold0561; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 7195 - 7040
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||| |||||||||||||||||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||||||| ||    
T  7195 caccacaaaacggtccatataaggatgaaatattctattcatatattccatgaagatacctggcgcattggatactccaaatggcatcacagaataccca 7096  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  7095 tagtgtccatacctcgtttggaacgctgttttggatatatcttccgccttcactct 7040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0369 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 102 - 229
Target Start/End: Original strand, 6888 - 7015
Alignment:
Q  102 aatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgcag 201  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6888 aatattctattcatgtattccataaagacacctggtgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgaag 6987  T
Q  202 ttttggatatatcttccgcctttactct 229  Q
    ||||| ||||||||||||||||||||||    
T  6988 ttttgaatatatcttccgcctttactct 7015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0120 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0120
Description:

Target: scaffold0120; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 24292 - 24447
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||||||||||||||||||||| || |||| |||||||||| ||||||| |||||||||||||||||||||| |||||||    
T  24292 caccacaaaacggtccagataaggatgaaatattctattcatatactccacaaagacacctagcgcattcgatactccaaatggcatcacagcatactca 24391  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||    
T  24392 tagtgtccataccttgttcggaacgcggttttggatatatcttccgccttcactct 24447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0387 (Bit Score: 115; Significance: 1e-58; HSPs: 1)
Name: scaffold0387
Description:

Target: scaffold0387; HSP #1
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 74 - 220
Target Start/End: Original strand, 16174 - 16320
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||||||||||||||||    
T  16174 caccacaaaacggtccagataaggttgaaatattctattcatgtattccatgaagacacctgacgcattggatactcaaaatggcatcacagaatactca 16273  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgc 220  Q
    |||||||||||||||||||||||||| ||||| ||||||||||||||    
T  16274 tagtgtccatacctcgttcggaacgcggttttagatatatcttccgc 16320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0610 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0610
Description:

Target: scaffold0610; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 7111 - 6964
Alignment:
Q  82 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 181  Q
    |||||||||||||||||||||||||| ||||||| || || || ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||    
T  7111 aacggtccagataaggatgaaatattttattcatatactcaatgaagacacctggtgcattggatactccaaatggcatcacagaatactcatagtgtcc 7012  T
Q  182 atacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||    
T  7011 atacctcgttcggaacgctgttttggatatatcttccgccttcactct 6964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0467 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0467
Description:

Target: scaffold0467; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 1811 - 1656
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||| || |||||||||    
T  1811 caccacaaaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattggaaactccaaatggcattacggaatactca 1712  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||| ||||||||| ||||||||||| |||||||||| |||||| ||||| |||||    
T  1711 tagtttccataccttgttcggaacgcggttttggatacatcttctgccttcactct 1656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0092 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 229
Target Start/End: Original strand, 223 - 378
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||| || ||||||||||||||||||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||||||||||    
T  223 caccacaaaacagtacagataaggatgaaatattctattcatatactctatgaagacacctggcgcattagatactccaaatggcatcacagaatactca 322  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||| |||||||||||  |||||||||||| ||||||||| |||||    
T  323 tagtgtccataccttgttcggaacgcgattttggatatatattccgccttcactct 378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021 (Bit Score: 108; Significance: 2e-54; HSPs: 3)
Name: scaffold0021
Description:

Target: scaffold0021; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 22037 - 21882
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||  ||||||||||||| ||||||||    
T  22037 caccacaaaacagtccagataaggatgaaatattctattcatatattccatgaagacacctggtgcattggatactttaaatggcatcacataatactca 21938  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  21937 tagtgtccatacctcgttcggaacgcggttttgaatatatcttccgccttcactct 21882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 229
Target Start/End: Complemental strand, 31613 - 31458
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| ||| |||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||  ||||||||||||| ||||||||    
T  31613 caccacaaaacagtccagataaggatgaaatattctattcatatattccatgaagacacctggtgcattggatactttaaatggcatcacataatactca 31514  T
Q  174 tagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  31513 tagtgtccatacctcgttcggaacgcggttttgaatatatcttccgccttcactct 31458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0021; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 74 - 182
Target Start/End: Original strand, 7330 - 7438
Alignment:
Q  74 caccacagaacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactca 173  Q
    ||||||| |||||| ||||||||||||||||||| ||||||| || ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  7330 caccacaaaacggttcagataaggatgaaatattatattcatatactccatgaagacacctggcgcattagatactccaaatggcatcacataatactca 7429  T
Q  174 tagtgtcca 182  Q
    |||||||||    
T  7430 tagtgtcca 7438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0876 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0876
Description:

Target: scaffold0876; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 82 - 229
Target Start/End: Complemental strand, 1128 - 981
Alignment:
Q  82 aacggtccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtcc 181  Q
    |||||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||| |||||| |||||||||||||||||||||||||||||||    
T  1128 aacggtccagataaggatgaaatattctattcatatattccatgaagatacctggcgcattggatactgcaaatggcatcacagaatactcatagtgtcc 1029  T
Q  182 atacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||   ||||| | ||||||||||||||| |||||    
T  1028 atacctcgttcggaacatggttttaggtatatcttccgccttcactct 981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 82; Significance: 7e-39; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 136 - 229
Target Start/End: Original strand, 2117 - 2210
Alignment:
Q  136 gcgcattagatactccaaatggcatcacagaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactct 229  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  2117 gcgcattagatactccaaatggcatcacataatactcatagtgtccatacctcgttcggaacacagttttggatatatcttccgccttcactct 2210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0635 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0635
Description:

Target: scaffold0635; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 87 - 206
Target Start/End: Original strand, 9024 - 9143
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccatacc 186  Q
    |||| ||||||||| || |||||||||||||||||||| ||||||||  |||||||||  || ||||||| ||||||| | || |||||||| |||||||    
T  9024 tccaaataaggatggaagattctattcatgtattccatgaagacaccaagcgcattagtcacaccaaatgacatcacaaagtattcatagtgcccatacc 9123  T
Q  187 tcgttcggaacgcagttttg 206  Q
    ||||||| || |||||||||    
T  9124 tcgttcgaaatgcagttttg 9143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0719 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: scaffold0719
Description:

Target: scaffold0719; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 156 - 218
Target Start/End: Original strand, 4785 - 4847
Alignment:
Q  156 ggcatcacagaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttcc 218  Q
    ||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  4785 ggcatcatagaatactcatagtgtccatacctcgttcggaacgcggttttggatatatcttcc 4847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0585 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0585
Description:

Target: scaffold0585; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 5266 - 5209
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| ||| || |||||||||||||| |||||||| ||||| ||||||||||    
T  5266 tccagataagcatggaaaattctattcatgtactccataaacacaccaggcgcattag 5209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 76630 - 76693
Alignment:
Q  165 gaatactcatagtgtccatacctcgttcggaacgcagttttggatatatcttccgcctttactc 228  Q
    ||||| ||| |||||||||| || || ||||| ||||||||||||||||  |||||||||||||    
T  76630 gaatattcaaagtgtccatatctagtccggaatgcagttttggatatatactccgcctttactc 76693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0465 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0465
Description:

Target: scaffold0465; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 182 - 216
Target Start/End: Complemental strand, 13707 - 13673
Alignment:
Q  182 atacctcgttcggaacgcagttttggatatatctt 216  Q
    |||||||||||||||||| ||||||||||||||||    
T  13707 atacctcgttcggaacgcggttttggatatatctt 13673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 184
Target Start/End: Complemental strand, 9188 - 9114
Alignment:
Q  110 attcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccata 184  Q
    ||||||||| |||||||| |||||||||||||| |  || || || |||||||| ||||| ||||| ||||||||    
T  9188 attcatgtactccataaacacacctggcgcatttgtaacaccgaaaggcatcactgaatattcataatgtccata 9114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0827 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0827
Description:

Target: scaffold0827; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 111 - 184
Target Start/End: Original strand, 5259 - 5332
Alignment:
Q  111 ttcatgtattccataaagacacctggcgcattagatactccaaatggcatcacagaatactcatagtgtccata 184  Q
    ||||| || |||||||| || |||||||| || || |||||||| |||||||| ||||||||||| || |||||    
T  5259 ttcatatactccataaacactcctggcgcgttggacactccaaaaggcatcaccgaatactcataatgaccata 5332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0730 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0730
Description:

Target: scaffold0730; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 178 - 121
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||||| |||||| ||||||||||| || ||||| || ||||| ||||||||||    
T  178 tccagataagcatgaaaaattctattcatatactccatgaacacaccaggcgcattag 121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 114688 - 114745
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    ||||| |||| |||||| ||||||||||| |||||||| || ||||| ||||||||||    
T  114688 tccaggtaagcatgaaaaattctattcatatattccatgaacacaccaggcgcattag 114745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 50939 - 50996
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||||||| | |||||| ||||||||||| || |||||||| ||||| ||||||||||    
T  50939 tccagataggcatgaaaaattctattcatatactccataaacacaccaggcgcattag 50996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 176521 - 176464
Alignment:
Q  87 tccagataaggatgaaatattctattcatgtattccataaagacacctggcgcattag 144  Q
    |||| ||||| ||| || |||||||||||||| |||||||| ||||| ||||||||||    
T  176521 tccaaataagcatggaaaattctattcatgtactccataaacacaccaggcgcattag 176464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: scaffold0270
Description:

Target: scaffold0270; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 6023 - 6055
Alignment:
Q  110 attcatgtattccataaagacacctggcgcatt 142  Q
    |||||||||||||||||| ||||||||||||||    
T  6023 attcatgtattccataaacacacctggcgcatt 6055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0270; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 142
Target Start/End: Original strand, 13153 - 13185
Alignment:
Q  110 attcatgtattccataaagacacctggcgcatt 142  Q
    |||||||||||||||||| ||||||||||||||    
T  13153 attcatgtattccataaacacacctggcgcatt 13185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University