View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_156 (Length: 213)

Name: NF1305_low_156
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_156
NF1305_low_156
[»] scaffold0657 (1 HSPs)
scaffold0657 (41-118)||(8496-8572)
[»] chr6 (1 HSPs)
chr6 (41-118)||(19814661-19814737)
[»] chr5 (2 HSPs)
chr5 (42-126)||(42862448-42862531)
chr5 (41-118)||(25043886-25043964)
[»] chr4 (1 HSPs)
chr4 (41-115)||(41951102-41951175)
[»] chr2 (2 HSPs)
chr2 (1-44)||(37215954-37215997)
chr2 (41-104)||(19713444-19713506)
[»] chr7 (1 HSPs)
chr7 (41-79)||(7646713-7646751)
[»] chr1 (1 HSPs)
chr1 (41-87)||(20600464-20600514)
[»] scaffold0150 (1 HSPs)
scaffold0150 (43-118)||(34805-34881)
[»] scaffold0028 (1 HSPs)
scaffold0028 (43-118)||(147443-147519)


Alignment Details
Target: scaffold0657 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0657
Description:

Target: scaffold0657; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 8572 - 8496
Alignment:
Q  41 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  8572 tggtatcagagcaataatcctcggactaatatttttggggtgggacgtgtttttatgacgcatgc-tttgattgatgt 8496  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 19814737 - 19814661
Alignment:
Q  41 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgt 118  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| ||| |||||||||||| ||||||||||||    
T  19814737 tggtatcagagcaataatcctcggactaatatttttggggtgggacgtgtttttatgacgcatgc-tttgattgatgt 19814661  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 42 - 126
Target Start/End: Original strand, 42862448 - 42862531
Alignment:
Q  42 ggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgtttgagaat 126  Q
    |||||||||| ||||||| |||||| |||||||| ||| |||||||| |||||||||||||||||||||||||||||||| ||||    
T  42862448 ggtatcagagtaataatcttcggactaatattttaggg-tgggacgtgtttgtatgacgcatgcttttgattgatgtttgggaat 42862531  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 25043964 - 25043886
Alignment:
Q  41 tggtatcagagcaataatcctcggac--aaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgt 118  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||   ||||||||||| || |||||||||||||    
T  25043964 tggtatcagagcaataatcctcggacaaaaatatttttggggtgggacgatcttgtatgacgcgtg-ttttgattgatgt 25043886  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 115
Target Start/End: Complemental strand, 41951175 - 41951102
Alignment:
Q  41 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatgcttttgattga 115  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||||||  ||| ||||| ||||||||||||||||    
T  41951175 tggtataagagcaatagtcctcggacaaatattttt-gggtgggacgcttttatatgatgcatgcttttgattga 41951102  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 37215997 - 37215954
Alignment:
Q  1 gtgaggacatgtgagtagtggtggttgttagtgtgaagggtggt 44  Q
    |||||| |||||||||||||||||||||||||||||||||||||    
T  37215997 gtgagggcatgtgagtagtggtggttgttagtgtgaagggtggt 37215954  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 104
Target Start/End: Complemental strand, 19713506 - 19713444
Alignment:
Q  41 tggtatcagagcaataatcctcggacaaatatttttggggtgggacgtatttgtatgacgcatg 104  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||   ||| ||||||||||    
T  19713506 tggtatcagagcaataatcctcggaaaaata-ttttggggtgggacgatcttgcatgacgcatg 19713444  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 79
Target Start/End: Original strand, 7646713 - 7646751
Alignment:
Q  41 tggtatcagagcaataatcctcggacaaatatttttggg 79  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  7646713 tggtatcagagcaataatcctcggacaaatgtttttggg 7646751  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 87
Target Start/End: Complemental strand, 20600514 - 20600464
Alignment:
Q  41 tggtatcagagcaataatcctcggac----aaatatttttggggtgggacg 87  Q
    |||||||||||| |||||||||||||    |||||||||||||||||||||    
T  20600514 tggtatcagagcgataatcctcggacaaaaaaatatttttggggtgggacg 20600464  T

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Target: scaffold0150 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 34881 - 34805
Alignment:
Q  43 gtatcagagcaataatcctcggac---aaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgt 118  Q
    |||| |||||||||||||||||||   |||||||||| |||||||||| ||| |||||| | |||| ||||||||||||    
T  34881 gtattagagcaataatcctcggacaaaaaatattttt-gggtgggacgaattcgtatgatgtatgc-tttgattgatgt 34805  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 118
Target Start/End: Complemental strand, 147519 - 147443
Alignment:
Q  43 gtatcagagcaataatcctcggac---aaatatttttggggtgggacgtatttgtatgacgcatgcttttgattgatgt 118  Q
    |||| |||||||||||||||||||   |||||||||| |||||||||| ||| |||||| | |||| ||||||||||||    
T  147519 gtattagagcaataatcctcggacaaaaaatattttt-gggtgggacgaattcgtatgatgtatgc-tttgattgatgt 147443  T

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