View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_17 (Length: 599)
Name: NF1305_low_17
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 517
Target Start/End: Complemental strand, 50456980 - 50456482
Alignment:
| Q |
1 |
acagcataataaaatcactcaaatttcgttactttagttgtaacatgtatagctttagcttgtgttatcttagttttttctctctcttatctttgacctc |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||| |
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| T |
50456980 |
acagcataataaa-tcactcaaatttcgttactttagttgtaacatgtatagctttagcttatgttatcttagttttttttttctcttatctttgacctc |
50456882 |
T |
|
| Q |
101 |
ttatagaattatggaactactcgtagctaagtacagaaaaataaattctcatttaaattccagtcggcacccaccacgatgattccactactatctttca |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
50456881 |
ttatagaattatgcaactactcgtagctaagtacagaaaaataaattctcatttaaattccaatcggcacccaccacgatgattccactactatctttca |
50456782 |
T |
|
| Q |
201 |
tttcttaacttttcttaaccaagtaactgggctaagtggttaatcagctccaacaaaagacaaaatattcgattagagaaccccttccggaagattaacg |
300 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456781 |
tttcttaac----------caagtaactgggctaagtggttaatcagctccaacaaaagacaaaatattcgattagagaaccccttccggaagattaacg |
50456692 |
T |
|
| Q |
301 |
caaagaaattgaaatactaatcaaaggatgaagaagaaacagaaaacataccgagatttgaacgggaagatgtagaatgagagattgagatcgctggggc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50456691 |
caaagaaattgaaatactaatcaaaggatgaagaagaaacagaaaacataccgagatttgaacgggaagatgtagaatgagagattgagatcgctggggc |
50456592 |
T |
|
| Q |
401 |
tgagcggagagtttgtaatttgtaatttgtattcaatcagaagcagaataagcggagagacgaaatcgaagtatatatagtaggcgtgcaaatgagataa |
500 |
Q |
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||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
50456591 |
tgagcagagagtttgtaatt-------tgtattcaatcagaagcagaataagcggagagacgaaatcgaagtatatatagtaggcgtgcaaatgagacaa |
50456499 |
T |
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