View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_18 (Length: 584)
Name: NF1305_low_18
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 29 - 461
Target Start/End: Original strand, 34866134 - 34866559
Alignment:
| Q |
29 |
aatcatatataaataatacgtgtgtttcacacggtaaaagagtgattattttagtttttgacacatgaaagattaagtgttggaaaaagtgtgttaaagt |
128 |
Q |
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| T |
34866134 |
aatcatatataaataatacgtgtatttcacacggtaaaagagtgattattttagtttttgacacatgaaagattaagtgttagaaaaagtgtgttaaagc |
34866233 |
T |
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| Q |
129 |
gaatgttgtaaatataatgtatttggggggtacatgtataaacggagagtatgaagtaaaattccattttaaacatataatcaaccgacaaaaacacggt |
228 |
Q |
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| T |
34866234 |
gaatgttgtaaatataatgtatttggggggtatatgtataaacggagagtatgaagtaaaattccattttaaacatataatcaaccaacaaaaacacggt |
34866333 |
T |
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| Q |
229 |
aattaactaacttcttcannnnnnngccgcgccaaattttgatgacaagctcataaaaattccaccaagcaagatcaaattgcaacacctgttttctgtt |
328 |
Q |
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| T |
34866334 |
aattaactaacttcacc-------cgccgcgccaaattttgatgacaagctcataaaaattccaccaagcaagatcaaattccaacacctgttttctgtt |
34866426 |
T |
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| Q |
329 |
ttcatctaacacctgttttcatatacaagaaatgggttctatgcagagttctcagaagagcaaagaagagatggaaactgccatgaataaagctaaggag |
428 |
Q |
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| T |
34866427 |
ttcatctaacacctgttttcatatacaagaaatgggttctatgcagagttctcagaagagcaaagaagagatggaaactgccatgaataaagctaaggag |
34866526 |
T |
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| Q |
429 |
attgccgcttcatcccccgtctttgtcttcagg |
461 |
Q |
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| T |
34866527 |
attgccgcttcatcccccgtctttgtcttcagg |
34866559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 487 - 555
Target Start/End: Original strand, 34866614 - 34866682
Alignment:
| Q |
487 |
atttttagggtttaggggaatctcaaaatagaccgactatatttatttctctatgtggtgtgtctcatg |
555 |
Q |
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| T |
34866614 |
atttttagggtttaggggaatctcaaaatagaccgactatatttatttctctatgtggtgtgtttcatg |
34866682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 34864131 - 34864203
Alignment:
| Q |
389 |
caaagaagagatggaaactgccatgaataaagctaaggagattgccgcttcatcccccgtctttgtcttcagg |
461 |
Q |
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| T |
34864131 |
caaagaagagatggaaacagcgttgaataaaactaaacagatcgctgcctcttcccccgtctttgtcttcagg |
34864203 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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