View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_19 (Length: 584)
Name: NF1305_low_19
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_19 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 29 - 575
Target Start/End: Complemental strand, 48961725 - 48961179
Alignment:
| Q |
29 |
actacaatcaattcaaacactatcttcgaatcaaatattgcgaccatcaacatgttccttcacatggtagccttcaccaaatggcttctttgagagagaa |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48961725 |
actacaatcaattcaaacactatcttcgaatcaaatattgcaaccatcaacattttccttcacatggtagccttcaccaaatggcttctttgagagagaa |
48961626 |
T |
|
| Q |
129 |
agacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgtacattgctgttcatgtatgcagccattggaattg |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48961625 |
agacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgtacattgctgttcatgtatgcagccattggaattg |
48961526 |
T |
|
| Q |
229 |
aagattttgttcttcctttgttattcttatctttcttgtttatttttccttcatcagcacttgaactctcagattcaccaccatcaactttgattgtgtt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
48961525 |
aagattttgttcttcctttgttattcttatctttcttgtttatttttccttcatcagcacttgaactctcagattcaccaccgtcaactttgattgtgtt |
48961426 |
T |
|
| Q |
329 |
ccccttcttgtgaagataattgggttggtgtttcttttgggattgaactagttccatataggctcctctgttttcccctgcaattgttatcactctcatg |
428 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48961425 |
ccccttcttgtgaagataattgggttggtgtttcttttgggattgaactagttccatataggctcctctgttttcccctgcaattgttatcactctcatg |
48961326 |
T |
|
| Q |
429 |
ccagagtcctcagaatctgaaaactttttctccttgctggattctcttcctttcacagtaatgtgttttccatgatgggaagaattgctgtgattttgag |
528 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48961325 |
ccagagtcctcagaatctgaaaactttttctccttgctggattctcttcctttcacagtaatgtgttttccatgatgggaagaattgctgtgattttgag |
48961226 |
T |
|
| Q |
529 |
tctgcctatggaattcaccattgctgtgattttgattctccctatgc |
575 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48961225 |
tctgcctatggaattcaccattgctgtgattttgattctccctatgc |
48961179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 96 - 211
Target Start/End: Complemental strand, 9486046 - 9485931
Alignment:
| Q |
96 |
tagccttcaccaaatggcttctttgagagagaaagacgcactcctggatcatgatgggagcaagaagcatgatacagtagagagttattgacacactgta |
195 |
Q |
| |
|
||||||| |||||||||||||||||| || | ||| |||| ||||||||||| |||| ||||||||||| | | | || ||||| |||||||| | |
|
|
| T |
9486046 |
tagcctttaccaaatggcttctttgaaagtgtaagttgcacccctggatcatggtgggtacaagaagcatgtaataacaatgaattattcacacactgca |
9485947 |
T |
|
| Q |
196 |
cattgctgttcatgta |
211 |
Q |
| |
|
||||||| |||||||| |
|
|
| T |
9485946 |
cattgctattcatgta |
9485931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University