View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_2 (Length: 781)
Name: NF1305_low_2
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_2 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 655; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 655; E-Value: 0
Query Start/End: Original strand, 81 - 751
Target Start/End: Complemental strand, 41486805 - 41486135
Alignment:
| Q |
81 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
180 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486805 |
cacagagcatcaagatataaatatataaaacttccagctaattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaagaa |
41486706 |
T |
|
| Q |
181 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttaaaatgaatttaacttcaagacaaaaatttaaaccag |
280 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
41486705 |
tataacgcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgatttcaaatgaatttaacttcaagacaaaaatttaaaccag |
41486606 |
T |
|
| Q |
281 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaaattccaaaaaacttcaactcctttca |
380 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
41486605 |
actacaaaagggagacaattgataccacctactcgtcgtgattaattttcaacataaatttcaataatcaacaatttccaaaaaacttcaactcctttca |
41486506 |
T |
|
| Q |
381 |
aagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcacta |
480 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41486505 |
aagttttaacacaaaagtcatacacattatctgctaaaagagtactcctacatgataagtaactatatataacaaccatacgaagtatcacaaggcacta |
41486406 |
T |
|
| Q |
481 |
accgttggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaa |
580 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41486405 |
accattggcataatgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaa |
41486306 |
T |
|
| Q |
581 |
gcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccag |
680 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41486305 |
gcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccag |
41486206 |
T |
|
| Q |
681 |
agttctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatc |
751 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
41486205 |
agttctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatc |
41486135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 7e-82
Query Start/End: Original strand, 494 - 751
Target Start/End: Complemental strand, 41472264 - 41472009
Alignment:
| Q |
494 |
tgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagct |
593 |
Q |
| |
|
||||| |||||||||||||| |||||||| || ||| | | || ||||||||| |||| |||||| ||||||||||||||||||||||||||||| | |
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| T |
41472264 |
tgtaccaaagtctgttagagttagaatttaaattaaatttttggc--atatataagcctaactctaagttcttaccgcccaaatgaagcctcaataagtt |
41472167 |
T |
|
| Q |
594 |
ttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattg |
693 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||| ||||||| |
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|
| T |
41472166 |
ttctttcccttatttaatatccattgcctaattaaatgggaaacaccctccttcaacgtggccttccttccttccctaaaattccagagttccggtattg |
41472067 |
T |
|
| Q |
694 |
ggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatc |
751 |
Q |
| |
|
|||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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|
| T |
41472066 |
ggtacctaccactagggttgcactcgtttaactccttcagagctgtagctactgcatc |
41472009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 147; E-Value: 4e-77
Query Start/End: Original strand, 533 - 751
Target Start/End: Complemental strand, 40753482 - 40753264
Alignment:
| Q |
533 |
tcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagctttctttcccttatttaatctccattgcttaattaaatgg |
632 |
Q |
| |
|
|||||||||| |||||||||| ||| ||| ||||||||||||||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||||||| |
|
|
| T |
40753482 |
tcctgcatatgtataagtctagttccaagttcttaccgcccaaatgaagcctcaataagttttctttcccttgtttgatttccatatcttaactaaatgg |
40753383 |
T |
|
| Q |
633 |
gaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttca |
732 |
Q |
| |
|
||||| || |||||||| |||||||||||||||||| |||||||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
40753382 |
gaaactccctccttcaacgaagccttccttccttccttaaaattccagagttccggtactgggtacctaccactagggttgtactcatttaactccttca |
40753283 |
T |
|
| Q |
733 |
gagctgtagctactgcatc |
751 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40753282 |
gagctgtagctactgcatc |
40753264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 546 - 751
Target Start/End: Complemental strand, 41479215 - 41479010
Alignment:
| Q |
546 |
taagtctaattctaagctcttaccgcccaaatgaagcctcaataagctttctttcccttatttaatctccattgcttaattaaatgggaaacaccttcct |
645 |
Q |
| |
|
|||||||||||||| | || |||| ||||||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||| |||| |
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|
| T |
41479215 |
taagtctaattctatgttcataccacccaaatgaagcctcaataagttttctttcccttatttaatttccattgcctaattaaatgggaaacaccctcct |
41479116 |
T |
|
| Q |
646 |
tcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggttgtactcatttaactccttcagagctgtagctac |
745 |
Q |
| |
|
|||| | |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||| |
|
|
| T |
41479115 |
tcaatgtggccttccttccttccctaaaattccagagttccggtattgggtacctaccactagggttgcactcgtttaactccttcagagctgtagctac |
41479016 |
T |
|
| Q |
746 |
tgcatc |
751 |
Q |
| |
|
|||||| |
|
|
| T |
41479015 |
tgcatc |
41479010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 143 - 460
Target Start/End: Complemental strand, 41487610 - 41487294
Alignment:
| Q |
143 |
gctaattgttataaaaacagttcaaactaaatcaagaatataac-gcttttttattgtatggaaatgatataatgctttatttttaggttcaggtacgat |
241 |
Q |
| |
|
||||||||||| || ||||||||||||||| |||||| ||||| | |||||||||||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
41487610 |
gctaattgtta-aagaacagttcaaactaactcaagactataaatggttttttattgtatggaaa-------atgctttatttttaggctcaggtacgat |
41487519 |
T |
|
| Q |
242 |
ttaaaatgaatttaactt--------caagacaaaaatttaaaccagactacaaaagggagacaattgataccacctactcgtcgtgattaattttcaac |
333 |
Q |
| |
|
|| ||||||||||||||| |||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||| ||||| |||| ||| |
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|
| T |
41487518 |
ttcaaatgaatttaacttaaatgtttcaagacaaaaatttaaaccagactacaacagg-agacgattgataccaccaactcgtctcgattactttttaac |
41487420 |
T |
|
| Q |
334 |
ataaatttcaataatcaacaaattccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcatacacattatctgctaaaagagtactcctacat |
433 |
Q |
| |
|
||| |||| | |||||||||| ||| ||||||||||||||| || |||||||||||| | |||||| | ||||||||||||||| ||| ||||||||| |
|
|
| T |
41487419 |
atatattttagtaatcaacaatttc-aaaaaacttcaactcgttacaaagttttaaaccttaagtcacaagcattatctgctaaaaaagtgctcctacat |
41487321 |
T |
|
| Q |
434 |
gataagtaactatatataacaaccata |
460 |
Q |
| |
|
||||||||| |||||||||||||||| |
|
|
| T |
41487320 |
gataagtaatgatatataacaaccata |
41487294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 262 - 402
Target Start/End: Complemental strand, 40753805 - 40753660
Alignment:
| Q |
262 |
agacaaaaatttaaaccagactacaaaagggagacaattga---taccacct---actcgtcgtgattaattttcaacataaatttcaataatcaacaaa |
355 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| ||||| |||||||| |||| | |||||| |||| ||||| ||||| |||||||| || |
|
|
| T |
40753805 |
agacaaaaatttaaaccaggcaacaaaagggagacgattgatagtaccacctaccactcaccttgattactttttgacatatgtttcagtaatcaac-aa |
40753707 |
T |
|
| Q |
356 |
ttccaaaaaacttcaactcctttcaaagttttaaaacaaaagtcata |
402 |
Q |
| |
|
|| ||||||||||||||| |||| ||||||||| ||||||||||| |
|
|
| T |
40753706 |
tttcaaaaaacttcaacttgtttcgaagttttaacccaaaagtcata |
40753660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 258 - 308
Target Start/End: Complemental strand, 41479473 - 41479424
Alignment:
| Q |
258 |
ttcaagacaaaaatttaaaccagactacaaaagggagacaattgataccac |
308 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| ||||||||||||||||| |
|
|
| T |
41479473 |
ttcaagacaaaaatttaaaccaaactac-aaagagagacaattgataccac |
41479424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 177
Target Start/End: Complemental strand, 40753958 - 40753902
Alignment:
| Q |
120 |
aattgtttttaaggcaacatattgctaattgttataaaaacagttcaaactaaatcaa |
177 |
Q |
| |
|
|||| ||||||||||||||| | ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
40753958 |
aattttttttaaggcaacatctagctgattgtt-taaaaacagttcaaactaaatcaa |
40753902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 169 - 227
Target Start/End: Complemental strand, 40753883 - 40753830
Alignment:
| Q |
169 |
ctaaatcaagaatataacgcttttttattgtatggaaatgatataatgctttattttta |
227 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
40753883 |
ctaaatcaagaatataatgctttt-----gtatggaaatgatataatgctttatcttta |
40753830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 494 - 751
Target Start/End: Original strand, 16407135 - 16407390
Alignment:
| Q |
494 |
tgtactaaagtctgttagagctagaatttcaactaagtatcctgcatatatataagtctaattctaagctcttaccgcccaaatgaagcctcaataagct |
593 |
Q |
| |
|
||||| |||||||||||||||| |||||| || ||| | ||| ||||||||| || ||| |||||| | ||||||||||||||| ||||||||||| | |
|
|
| T |
16407135 |
tgtacaaaagtctgttagagctcgaatttaaattaaatttccggcatatata--agcgtaactctaagttattaccgcccaaatgatgcctcaataagtt |
16407232 |
T |
|
| Q |
594 |
ttctttcccttatttaatctccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattg |
693 |
Q |
| |
|
|||||||| ||| || | |||||| ||||||||||| ||||||||||||||||| |||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
16407233 |
ttctttcctttacttgctttccatttattaattaaatgcgaaacaccttccttcaacgaagccttccttccttccttaaaattccagagttccggtattg |
16407332 |
T |
|
| Q |
694 |
ggtatctaccactagggttgtactcatttaactccttcagagctgtagctactgcatc |
751 |
Q |
| |
|
| | || |||||||| |||||||||||||||||||||||||| |||| ||||||||| |
|
|
| T |
16407333 |
gattcctgccactaggattgtactcatttaactccttcagagccgtagatactgcatc |
16407390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 613 - 751
Target Start/End: Complemental strand, 52482385 - 52482247
Alignment:
| Q |
613 |
tccattgcttaattaaatgggaaacaccttccttcaaggaagccttccttccttccctaaaattccagagttctggtattgggtatctaccactagggtt |
712 |
Q |
| |
|
|||||||| |||||||||| |||||||| ||||||| | |||||||||||||||| |||||||||||||||| |||||| |||||| |||||||| || |
|
|
| T |
52482385 |
tccattgcctaattaaatgtgaaacaccctccttcaccgtagccttccttccttccttaaaattccagagttcaagtattgagtatcttccactaggatt |
52482286 |
T |
|
| Q |
713 |
gtactcatttaactccttcagagctgtagctactgcatc |
751 |
Q |
| |
|
|||||||||||||||||| ||||||||| |||||||||| |
|
|
| T |
52482285 |
gtactcatttaactcctttagagctgtaactactgcatc |
52482247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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