View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_20 (Length: 574)

Name: NF1305_low_20
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_20
NF1305_low_20
[»] chr4 (8 HSPs)
chr4 (305-526)||(4337092-4337313)
chr4 (2-251)||(4337367-4337615)
chr4 (305-526)||(4319177-4319407)
chr4 (318-524)||(4122538-4122747)
chr4 (419-526)||(4132616-4132720)
chr4 (306-526)||(4346553-4346779)
chr4 (312-369)||(4132515-4132572)
chr4 (419-526)||(4362742-4362849)
[»] chr6 (7 HSPs)
chr6 (419-532)||(5065447-5065560)
chr6 (424-504)||(5253745-5253825)
chr6 (419-525)||(5177930-5178036)
chr6 (419-525)||(5279755-5279861)
chr6 (419-524)||(5126627-5126732)
chr6 (419-525)||(5346220-5346326)
chr6 (419-525)||(5688901-5689007)
[»] chr7 (1 HSPs)
chr7 (419-532)||(36212919-36213032)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 305 - 526
Target Start/End: Complemental strand, 4337313 - 4337092
Alignment:
Q  305 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337313 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 4337214  T
Q  405 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 504  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337213 gctcaaatttttcgtcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 4337114  T
Q  505 catatttgataccactctctgc 526  Q
    ||||||||||||||||||||||    
T  4337113 catatttgataccactctctgc 4337092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 2 - 251
Target Start/End: Complemental strand, 4337615 - 4337367
Alignment:
Q  2 aggagttggctttgtggtctgaagaattgggatctaggagcgtgctcttctctaggtatcgaatttgaattccccaagtaccaaaaattcttgtgttggg 101  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4337615 aggagttggctttgtggtgtgaagacttgggatctaggagcgtgctcttctctaggtatcgaatttgaattccccaagtaccaaaaattcttgtgttggg 4337516  T
Q  102 cccaatggagatacaaagctttgttcttgtagcaattggggccccc-gctagtggttagtgggatttatccccc-ggattagttggtccttaggccggat 199  Q
    ||        ||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4337515 ccgctcc---atacaaagctttgttctggtagcaattgggcccccccgctagtggttagtgggatttatccccccggattagttggtccttaggccggat 4337419  T
Q  200 atggagttttcaagagnnnnnnntcagctcaaattaaaatttacctggcaag 251  Q
    ||||||||||||||||       |||||||||||||||||||||||||||||    
T  4337418 atggagttttcaagagaaaaaaatcagctcaaattaaaatttacctggcaag 4337367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 305 - 526
Target Start/End: Original strand, 4319177 - 4319407
Alignment:
Q  305 aaatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacatt 404  Q
    |||||||||| ||||||||||||  ||||||||||| |||||||||||||||||| ||||||  | ||||| |||||||||| |||||||| ||||||||    
T  4319177 aaatcatctgtaggctctacttggcgagagatcctcatggcagcacattcattttcatcaccgatatcaacaagaacattcttatctggtgtatgacatt 4319276  T
Q  405 gctcaaatttttcg---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatc 495  Q
    |||| ||| |||||         |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||| ||||||||||| || || ||    
T  4319277 gctccaatatttcgacgactggttcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaacgacaacaatctccaccttgtc 4319376  T
Q  496 accaggttccatatttgataccactctctgc 526  Q
    ||||||||||||||||| ||| |||||||||    
T  4319377 accaggttccatatttgttacaactctctgc 4319407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 318 - 524
Target Start/End: Original strand, 4122538 - 4122747
Alignment:
Q  318 gctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattgctcaaatttttc 417  Q
    |||||||||| ||||||| |||||||||||| |||||||||| | ||||||   ||||   |||||||| || ||||||||| |||||||| | ||||||    
T  4122538 gctctacttgcagagagaccctcttggcagcgcattcattttcagcaccac---caac---aacattcttatttggtgcatggcattgctctattttttc 4122631  T
Q  418 g---------tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccata 508  Q
              |||| ||||||||||||||||| |||| ||||||||||  ||||||| |||||||||||||||||||| ||||| |||||||||||||||    
T  4122632 accgattggttcatcatatatgagataaactgatgtcttcatcacaatgaaactgtttccaaaaacaacaacaatctccactttgtcaccaggttccata 4122731  T
Q  509 tttgataccactctct 524  Q
    ||||||||||||||||    
T  4122732 tttgataccactctct 4122747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 419 - 526
Target Start/End: Original strand, 4132616 - 4132720
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||||||||||||||| |||| ||||||||||  |||||||||||||||||   |||||||||||||| ||||||||||||||||||||||| |    
T  4132616 tcatcatatatgagataaactgctgtcttcatcacaatgaaactgttcccaaaaaca---acaatctcgactttgtcaccaggttccatatttgatacta 4132712  T
Q  519 ctctctgc 526  Q
    ||||||||    
T  4132713 ctctctgc 4132720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 306 - 526
Target Start/End: Complemental strand, 4346779 - 4346553
Alignment:
Q  306 aatcatctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccactctcaacgagaacattctcatctggtgcatgacattg 405  Q
    |||||||||  | |||||||||| |||| |||||||||| ||  |||||||||| ||||||||   |||| | |||||||  ||||||||||| ||| ||    
T  4346779 aatcatctgtggactctacttgaggagaaatcctcttggaagagcattcattttcatcaccac---caacaataacattcatatctggtgcatcacaatg 4346683  T
Q  406 ctcaaatttttcgtca---------tgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatca 496  Q
     || | ||||||||||         | ||||||||||||||||| |||| || |||||||   | ||||| | | ||||||||| ||||| ||||| |||    
T  4346682 gtctattttttcgtcaattggttcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccataacaacaactatctccactttgtca 4346583  T
Q  497 ccaggttccatatttgataccactctctgc 526  Q
    |||||||||||||| |||| || |||||||    
T  4346582 ccaggttccatattcgatatcattctctgc 4346553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 312 - 369
Target Start/End: Original strand, 4132515 - 4132572
Alignment:
Q  312 ctgcaggctctacttgaagagagatcctcttggcagcacattcatttttatcaccact 369  Q
    |||| |||||||||||||||| || ||||||||||||||||||||||| |||||||||    
T  4132515 ctgcgggctctacttgaagagtgaacctcttggcagcacattcattttcatcaccact 4132572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 419 - 526
Target Start/End: Complemental strand, 4362849 - 4362742
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||||||||||||||| |||| || |||||||   | ||||| | |  |||| ||| ||||| ||||| |||||||||||||||||||||| ||    
T  4362849 tcatcatatatgagataaactgctgtcttcgtcacaatgacattgttcaccattacaataactatctccactttgtcaccaggttccatatttgatatca 4362750  T
Q  519 ctctctgc 526  Q
    ||||||||    
T  4362749 ctctctgc 4362742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 419 - 532
Target Start/End: Original strand, 5065447 - 5065560
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||||||||||||||||||||||| ||||||   ||| |||| |||||||||||||||  || |||||||  |||||||| ||| ||||||| |    
T  5065447 tcatcatatatgagataaactgttgtcctcttcacaacgaaaccgttctcaaaaacaacaacaaaatccactttatttccaggttcaatacttgatacta 5065546  T
Q  519 ctctctgctcctcc 532  Q
    |||||||| |||||    
T  5065547 ctctctgcccctcc 5065560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 424 - 504
Target Start/End: Complemental strand, 5253825 - 5253745
Alignment:
Q  424 atatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttc 504  Q
    |||||||||||||||||| |||||| |||||||  |||||||| ||||||||||||||| ||| |||||||  ||||||||    
T  5253825 atatatgagataaactgtcgtcctcttcacaatgaaactgttctcaaaaacaacaacaaactccactttatttccaggttc 5253745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 525
Target Start/End: Complemental strand, 5178036 - 5177930
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5178036 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5177937  T
Q  519 ctctctg 525  Q
    |||||||    
T  5177936 ctctctg 5177930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 419 - 525
Target Start/End: Complemental strand, 5279861 - 5279755
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||||||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5279861 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttacaaggttctatacttgatacta 5279762  T
Q  519 ctctctg 525  Q
    |||||||    
T  5279761 ctctctg 5279755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 524
Target Start/End: Original strand, 5126627 - 5126732
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||||||||||||| | |||| || |||||||  ||| ||||  |||||||||||||||||| ||||| | ||||| ||| ||| ||||||| |    
T  5126627 tcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttaccagcttctatacttgatacta 5126726  T
Q  519 ctctct 524  Q
    ||||||    
T  5126727 ctctct 5126732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 525
Target Start/End: Complemental strand, 5346326 - 5346220
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| |||||||||||||| || |||| || |||||||  |||  ||| ||| |||||| |||| ||| ||||| | ||||||||| ||| ||||||| |    
T  5346326 tcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttaccaggttctatacttgatacaa 5346227  T
Q  519 ctctctg 525  Q
    |||||||    
T  5346226 ctctctg 5346220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 525
Target Start/End: Original strand, 5688901 - 5689007
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||||| |||||||||||||||  || |||||||  ||| |||| ||||||||  ||||| ||| ||||| | || |||||| ||| ||||||| |    
T  5688901 tcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttacaaggttctatacttgatacta 5689000  T
Q  519 ctctctg 525  Q
    |||||||    
T  5689001 ctctctg 5689007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 419 - 532
Target Start/End: Original strand, 36212919 - 36213032
Alignment:
Q  419 tcatgatatatgagataaactgttgtcctcatcacaatataactgttcccaaaaacaacaacaatctcgactttatcaccaggttccatatttgatacca 518  Q
    |||| ||| ||||||||||  | |||| || |||||||  || ||||| ||||||||||||||| ||| | ||||||||||||||| ||| ||||||| |    
T  36212919 tcatcataaatgagataaatcgctgtcttcttcacaatgaaattgttctcaaaaacaacaacaacctccattttatcaccaggttctatacttgatacta 36213018  T
Q  519 ctctctgctcctcc 532  Q
     ||||||| |||||    
T  36213019 atctctgcccctcc 36213032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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