View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_22 (Length: 566)
Name: NF1305_low_22
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 6e-97; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 6e-97
Query Start/End: Original strand, 203 - 476
Target Start/End: Complemental strand, 40865508 - 40865243
Alignment:
| Q |
203 |
aggcaaccatacaaaaaataagagacactgataagtggctagaacctattaagcatgggcagatttaccgtccggcgagcctgggctcagcggcggatct |
302 |
Q |
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| T |
40865508 |
aggcaaccatacaaaaaataagagacgcagacaagtggctagaacctattaagcatgggcagatttaccgcctggcgagcctgggctcagcggcggattt |
40865409 |
T |
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| Q |
303 |
tctcctagatccatggcaccccccactgtttctatatatataatatctggcaaatttatcacacaagtttctctctgtctcggtggttaggaagcgcaat |
402 |
Q |
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| T |
40865408 |
tctcctagacccatggcatccct-agtgtttatatatat-------ctggcaaatttatcacacaagtttccctctatcttggtggttaggaagcgcaat |
40865317 |
T |
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| Q |
403 |
tttattcttgatgtcttgtgtttgagtcctgcttcctctcatttttatattaatattatatttttaattttatt |
476 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40865316 |
tttattcttgatgtcttgtgtttgagtcttgcttcctctcatttttatattaatattatatttttaattttatt |
40865243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 48 - 173
Target Start/End: Complemental strand, 40865694 - 40865568
Alignment:
| Q |
48 |
caccacagagggaagagacgacaaagacatggcaatgcatgaattgtgacaacgggaaaaacaaagtgcaacttataacaataccaagctacaaatcaag |
147 |
Q |
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| T |
40865694 |
caccacaaagggaagagacgacaaagacatggcaatgcatgaattgtgacaacggaaaaaacaaagtgcaacttataacaataccaagctacaaatcaag |
40865595 |
T |
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| Q |
148 |
gtgcagaataata-atatatatttata |
173 |
Q |
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| T |
40865594 |
gtgcagaataatatatatatatatata |
40865568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 313 - 476
Target Start/End: Original strand, 25016782 - 25016945
Alignment:
| Q |
313 |
ccatggcaccccccactgtttctatatatataatatctggcaaatttatc--acacaagtttctctctgtctcggtggttaggaagcgcaattttattct |
410 |
Q |
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|||||||| |||| | ||||||||||||||| ||||||||| ||||||| | |||| |||| ||||||||| |||||||| ||||||||| ||||||| |
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| T |
25016782 |
ccatggcatcccctagtgtttctatatatatgatatctggctaatttattttaaacaa-tttccctctgtctcagtggttagaaagcgcaatattattct |
25016880 |
T |
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| Q |
411 |
tgatgtcttgtgtttgagtcctgcttcctctcatttttatattaatattatatttttaattttatt |
476 |
Q |
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| T |
25016881 |
tgatgtctcttgttctagtcctgcttcctctcatttttatatttct-ttatattttttattttatt |
25016945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 313 - 442
Target Start/End: Original strand, 25016615 - 25016743
Alignment:
| Q |
313 |
ccatggcaccccccactgtttctatatatataatatctggcaaatttatcacacaagtttctctctgtctcggtggttaggaagcgcaattttattcttg |
412 |
Q |
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|||||||| |||||| ||||||||||| ||| ||||||||| ||||||| || ||||||| || |||||| |||||||||||||| || |||||||||| |
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| T |
25016615 |
ccatggcatcccccagtgtttctatatgtatgatatctggctaatttatttcagaagtttccctttgtctcagtggttaggaagcggaa-tttattcttg |
25016713 |
T |
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| Q |
413 |
atgtcttgtgtttgagtcctgcttcctctc |
442 |
Q |
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| T |
25016714 |
atgtctcgtgttcgagtcctgcttcctctc |
25016743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 363 - 464
Target Start/End: Original strand, 10241188 - 10241289
Alignment:
| Q |
363 |
acacaagtttctctctgtctcggtggttaggaagcgcaattttattcttgatgtcttgtgtttgagtcctgcttcctctcatttttatattaatattata |
462 |
Q |
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||||||| ||| || ||||||| ||||||||||| ||||||| || | ||||||| |||| |||||||| |||| |||||||||||||| ||||||| |
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| T |
10241188 |
acacaagattccctttgtctcgatggttaggaagtacaattttcttttggatgtctcgtgtctgagtcctaattcccctcatttttatatttctattata |
10241287 |
T |
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| Q |
463 |
tt |
464 |
Q |
| |
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|| |
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| T |
10241288 |
tt |
10241289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 469
Target Start/End: Complemental strand, 22714677 - 22714588
Alignment:
| Q |
380 |
tctcggtggttaggaagcgcaattttattcttgatgtcttgtgtttgagtcctgcttcctctcatttttatattaatattatatttttaa |
469 |
Q |
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||||| ||||||||||| ||||||| || | |||||| |||||||||||| ||||| | ||||||||||| |||||||||||||| |
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| T |
22714677 |
tctcgatggttaggaagtacaattttcttatggatgtcccatgtttgagtcctaattccttttatttttatatttctattatatttttaa |
22714588 |
T |
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