View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_23 (Length: 535)

Name: NF1305_low_23
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_23
NF1305_low_23
[»] chr2 (3 HSPs)
chr2 (86-516)||(25290440-25290871)
chr2 (374-481)||(19251123-19251230)
chr2 (212-300)||(19251002-19251089)
[»] chr3 (3 HSPs)
chr3 (212-499)||(9443534-9443821)
chr3 (207-265)||(744434-744492)
chr3 (207-265)||(748364-748422)
[»] chr8 (2 HSPs)
chr8 (212-465)||(4282118-4282372)
chr8 (238-316)||(25187880-25187958)
[»] chr4 (1 HSPs)
chr4 (196-367)||(19724198-19724369)
[»] chr5 (2 HSPs)
chr5 (212-382)||(15063000-15063174)
chr5 (212-319)||(28800958-28801065)
[»] chr1 (1 HSPs)
chr1 (341-410)||(17193029-17193098)
[»] chr6 (1 HSPs)
chr6 (212-319)||(7859337-7859443)


Alignment Details
Target: chr2 (Bit Score: 388; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 86 - 516
Target Start/End: Complemental strand, 25290871 - 25290440
Alignment:
Q  86 cacagaccgcaccactagcaaaactgtcaggagcataacgcagccaaaaacagaaaaaacagcagcactgaaagacaacacagcagtcttataataacag 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25290871 cacagaccgcaccactagcaaaactgtcaggagcataacgcagccaaaaacagaaaaaacagcagcactgaaagacaacacaacagtcttataataacag 25290772  T
Q  186 ctccaaaggtaaaaa-caccggaaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactc 284  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25290771 ctccaaaggtaaaaaacaccggaaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactc 25290672  T
Q  285 atactctaataccaagctagaatcttgatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaatca 384  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||    
T  25290671 atactccaataccaagctagaatcttgatcttctcaatgaaaatatctacattcaccacaccattattgaaaataatctcattcctttgcttccaaatca 25290572  T
Q  385 ctcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaagagattatgggg 484  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  25290571 ctcaaatagaggcaagccaaatcaaacaaaatccccttcttaatttcttagaaatagcctcatttaaccaacattcaaaatgtacatagagattatgggg 25290472  T
Q  485 tattatgaagtgaaattctaaccaacacatca 516  Q
    ||||||||||||||||||||||||||||||||    
T  25290471 tattatgaagtgaaattctaaccaacacatca 25290440  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 374 - 481
Target Start/End: Original strand, 19251123 - 19251230
Alignment:
Q  374 cttccaaatcactcaaatagaggcaagccaaatcaaacaaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaag 473  Q
    |||||||||  | ||||||||  ||| |||||||||| |||| |||||||| | ||| |||||||||||||| || ||||||||||||||| | |||||     
T  19251123 cttccaaatagcccaaatagaatcaacccaaatcaaataaaaaccccttctaattttattagaagtagcctccttaaaccaacattcaaaacgaacaaaa 19251222  T
Q  474 agattatg 481  Q
    ||||||||    
T  19251223 agattatg 19251230  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 300
Target Start/End: Original strand, 19251002 - 19251089
Alignment:
Q  212 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaag 300  Q
    ||||||||||||||| | |||||||||| ||| ||||| |||||||||||||  |  | |||| ||||||||||||||| || ||||||    
T  19251002 ctatctaagtaagcattaccgagggttctaacaccacttataatacaaacacatgatg-ttttcaacttactcatactccaaaaccaag 19251089  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 212 - 499
Target Start/End: Original strand, 9443534 - 9443821
Alignment:
Q  212 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttg 311  Q
    ||||| |||||||||||||||||||||||||| |||||||||| |||| ||||   | ||||||| ||||||||||||| ||||||||||||| | ||||    
T  9443534 ctatcgaagtaagcactcccgagggttccaacaccactcataagacaagcacgtcgctatttttagcttactcatactccaataccaagctaggaccttg 9443633  T
Q  312 atattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaac 411  Q
    |||||||| |  ||    || || || | |||||||||||| ||||| | ||||||| ||| ||||||||| || ||||||||  |||||||||| ||      
T  9443634 atattctccaccaattcctccatctcaaccacaccattattaaaaatcacctcattctttttcttccaaataacccaaatagaatcaagccaaattaaga 9443733  T
Q  412 aaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaatgtacaaagagattatggggtattatgaagtgaaa 499  Q
    ||||  ||| ||| | ||||  ||||| ||||||||   |||| ||||||||||||  ||| |||||||| ||||||| ||| |||||    
T  9443734 aaaatacccgtctcattttcaaagaaggagcctcataataccaccattcaaaatgtgaaaaaagattatgtggtattacgaaatgaaa 9443821  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 744434 - 744492
Alignment:
Q  207 aaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacga 265  Q
    |||| |||||||| |||| | || ||||||||||||| |||||| ||||||||||||||    
T  744434 aaaagctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacga 744492  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 265
Target Start/End: Original strand, 748364 - 748422
Alignment:
Q  207 aaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacga 265  Q
    |||| |||||||| |||| | || ||||||||||||| |||||| ||||||||||||||    
T  748364 aaaacctatctaattaagtattctcgagggttccaacaccactcgtaatacaaacacga 748422  T

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Target: chr8 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 212 - 465
Target Start/End: Complemental strand, 4282372 - 4282118
Alignment:
Q  212 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaa-cttactcatactctaataccaagctagaatctt 310  Q
    |||||| ||||| || |||||||||||||||| |||||||||||||||||| |   | |||||| | ||||||||||||| ||||||||||||||| |||    
T  4282372 ctatcttagtaaacaatcccgagggttccaacaccactcataatacaaacatgtcgctatttttcagcttactcatactccaataccaagctagaacctt 4282273  T
Q  311 gatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaa 410  Q
     |||||||| |  | |   || || || |  ||||||||||| || |||| |||||| |||  ||||||||| || |||||||| ||||||||||||||     
T  4282272 tatattctcgaccacatcctccatctctacaacaccattattaaagataacctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaag 4282173  T
Q  411 caaaacccccttcttaatttcttagaagtagcctcatttaaccaacattcaaaat 465  Q
    ||||| |||| ||||| |||| |||| | ||||||||   |||||||||||||||    
T  4282172 caaaatccccgtcttattttcctagatgaagcctcataataccaacattcaaaat 4282118  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 238 - 316
Target Start/End: Original strand, 25187880 - 25187958
Alignment:
Q  238 tccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttgatatt 316  Q
    |||||| ||||||||||||||| ||| |  | ||||||||||||||||||||| ||||||||||||  |||||||||||    
T  25187880 tccaacaccactcataatacaagcacaatgctatttttaacttactcatactccaataccaagctaacatcttgatatt 25187958  T

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Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 196 - 367
Target Start/End: Original strand, 19724198 - 19724369
Alignment:
Q  196 aaaaacaccggaaaaactatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaata 295  Q
    |||||||||  || |||||||||||||| |||||| |||||||||||| | |||| ||||||||||| ||  | ||||||    ||||||||||| ||||    
T  19724198 aaaaacaccataacaactatctaagtaaacactcctgagggttccaacacaactcttaatacaaacatgataccattttttgtctactcatactccaata 19724297  T
Q  296 ccaagctagaatcttgatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcatt 367  Q
    ||||||||  | ||||||||||||||| ||    ||||  || | |||||||||||||||||||||||||||    
T  19724298 ccaagctaacaccttgatattctcaatcaattcttctacctcaagcacaccattattgaaaataatctcatt 19724369  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 212 - 382
Target Start/End: Original strand, 15063000 - 15063174
Alignment:
Q  212 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagcta----gaat 307  Q
    |||||||||||  | ||||||||||||||||| |||||| ||||||||||||||     |||||  | ||||||||||| ||||||||||||      |     
T  15063000 ctatctaagtagacgctcccgagggttccaacgccactcgtaatacaaacacgatatcgtttttcgcctactcatactccaataccaagctaacgtacac 15063099  T
Q  308 cttgatattctcaatgaaaatatctatatccatcacaccattattgaaaataatctcattcctttgcttccaaat 382  Q
    ||||||||||||||| ||    ||||  || | ||||||||||||||| |||||||||||| | |||||||||||    
T  15063100 cttgatattctcaatcaattcctctacctcaaccacaccattattgaagataatctcattcatatgcttccaaat 15063174  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 28801065 - 28800958
Alignment:
Q  212 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttg 311  Q
    |||||||||||| || | |  ||||||||||| ||| ||||||||| |||| ||  | ||||| |  || ||||||||| ||||||||||||||| ||||    
T  28801065 ctatctaagtaaacaattctaagggttccaacaccaatcataatacgaacatgatgctattttaagtttgctcatactccaataccaagctagaaccttg 28800966  T
Q  312 atattctc 319  Q
    ||||||||    
T  28800965 atattctc 28800958  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 341 - 410
Target Start/End: Complemental strand, 17193098 - 17193029
Alignment:
Q  341 cacaccattattgaaaataatctcattcctttgcttccaaatcactcaaatagaggcaagccaaatcaaa 410  Q
    ||||||||| |||||||| |||||||| |||  ||||||||| || |||||||| |||||||||||||||    
T  17193098 cacaccatttttgaaaattatctcatttcttctcttccaaataacccaaatagaagcaagccaaatcaaa 17193029  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 7859443 - 7859337
Alignment:
Q  212 ctatctaagtaagcactcccgagggttccaactccactcataatacaaacacgagccgatttttaacttactcatactctaataccaagctagaatcttg 311  Q
    |||||||||||| || |||| ||  ||| ||| ||||||||||||||||||||   | ||| | | ||||||||||||| |||||||||| |||| ||||    
T  7859443 ctatctaagtaa-caatcccaagaattcgaacaccactcataatacaaacacgtcgctattatcagcttactcatactccaataccaagcaagaaccttg 7859345  T
Q  312 atattctc 319  Q
    ||||||||    
T  7859344 atattctc 7859337  T

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