View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_24 (Length: 527)

Name: NF1305_low_24
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_24
NF1305_low_24
[»] chr6 (5 HSPs)
chr6 (82-514)||(16863589-16864021)
chr6 (425-517)||(12182168-12182260)
chr6 (388-428)||(6977867-6977907)
chr6 (392-427)||(16863511-16863546)
chr6 (388-421)||(6977316-6977349)
[»] chr7 (1 HSPs)
chr7 (82-386)||(40471265-40471583)
[»] chr3 (3 HSPs)
chr3 (425-517)||(48057828-48057920)
chr3 (388-427)||(48053440-48053479)
chr3 (182-243)||(2056345-2056406)
[»] chr2 (4 HSPs)
chr2 (425-517)||(28851104-28851196)
chr2 (425-513)||(1389772-1389860)
chr2 (388-427)||(28847608-28847647)
chr2 (391-427)||(1394607-1394643)
[»] chr5 (3 HSPs)
chr5 (425-513)||(8066913-8067001)
chr5 (182-228)||(18876301-18876347)
chr5 (391-427)||(8062125-8062161)
[»] chr4 (3 HSPs)
chr4 (425-498)||(9180080-9180153)
chr4 (388-427)||(55986007-55986046)
chr4 (388-427)||(55985056-55985095)
[»] chr8 (1 HSPs)
chr8 (388-427)||(38613154-38613193)


Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 82 - 514
Target Start/End: Original strand, 16863589 - 16864021
Alignment:
Q  82 gcaccacagaacattgaggaggactaaaaagcattaccatccacaaataatgctgatagaccttcgtctgatggatataactagagaaaatatggacaga 181  Q
    |||||||||| ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||    
T  16863589 gcaccacagagcattgaggaggaccaaaaagcattaccatccacaaataatgttgatagaccttcgtatgatggatataactagagaaaatatggaaaga 16863688  T
Q  182 agcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgttt 281  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16863689 agcgagtatcttcgaagttattacaagtgcacatatcctaattatccagttaaaaagaaagttgaaagatcattagatggtgagattgcagaaattgttt 16863788  T
Q  282 ataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggttcaagataaagtatg 381  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  16863789 ataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgacttctgatggaatggttcaagataaagtatg 16863888  T
Q  382 gagtatcccccaattcttcaacccttcttcttcatctgttcttcttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttg 481  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  16863889 gagtatcccccaattcttcaacccttcttcttcatctgttcttcttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccttgagttg 16863988  T
Q  482 atgtaacttccatattcgaatctttcttcttct 514  Q
    |||||||||||||||| ||||||||||||||||    
T  16863989 atgtaacttccatattggaatctttcttcttct 16864021  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 425 - 517
Target Start/End: Complemental strand, 12182260 - 12182168
Alignment:
Q  425 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttctctg 517  Q
    |||||| ||||||||||||||||| ||||| ||||  ||||| ||||||||||||||||  ||||||||||||| ||||| || |||||||||    
T  12182260 cttactatgaagcatccatgtcgggaatctttccattgaacatgtttccttgagttgattgaacttccatattcaaatctctcgtcttctctg 12182168  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 388 - 428
Target Start/End: Complemental strand, 6977907 - 6977867
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgttcttctta 428  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6977907 ccccaaattcttcaacccttcttcttcatctgttcttctta 6977867  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 392 - 427
Target Start/End: Original strand, 16863511 - 16863546
Alignment:
Q  392 caattcttcaacccttcttcttcatctgttcttctt 427  Q
    ||||||||||||||||||||||||||||||||||||    
T  16863511 caattcttcaacccttcttcttcatctgttcttctt 16863546  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Original strand, 6977316 - 6977349
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgtt 421  Q
    |||| |||||||||||||||||||||||||||||    
T  6977316 ccccaaattcttcaacccttcttcttcatctgtt 6977349  T

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Target: chr7 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 40471583 - 40471265
Alignment:
Q  82 gcaccacagaacattgaggaggactaaaaagcattaccatccacaaataatgctgatagaccttcgtctgatggatataactagagaaaatatggacaga 181  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  40471583 gcaccacagaacattgaggaggaccaaaaagcattaccatccacaaataatgctgatagaccttcgtatgatggatataactggagaaaatatggacaga 40471484  T
Q  182 agc--------------gagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagat 267  Q
    |||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471483 agcaagtaaaaggaagcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagttgaaagatcattagatggtgagat 40471384  T
Q  268 tgcagaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggtt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40471383 tgcagaaattgtttataaaggtgaacacaaccatggaaagccacaacatcaaaagcgaaactcgggagcaacatcaggaatgatttctgatggaatggtt 40471284  T
Q  368 caagataaagtatggagta 386  Q
    |||||||||||||||||||    
T  40471283 caagataaagtatggagta 40471265  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 425 - 517
Target Start/End: Original strand, 48057828 - 48057920
Alignment:
Q  425 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttctctg 517  Q
    |||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||  |||||||||||||||||||||| |||||||||    
T  48057828 cttactttgaagcatccatgtcgggaatctgtccagagaacacgttttcttgagttgatagaacttccatattcgaatctttcgtcttctctg 48057920  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 48053440 - 48053479
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  48053440 cccccaattcttcaacccttcttcttcatctgttcttctt 48053479  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 182 - 243
Target Start/End: Original strand, 2056345 - 2056406
Alignment:
Q  182 agcgagtatcctcgaagttattacaagtgcacatatcctaattgtccagttaaaaagaaagt 243  Q
    |||||||| ||||||||||| |||||||| ||  || | |||||||||||||||||||||||    
T  2056345 agcgagtaccctcgaagttactacaagtgtactcattcaaattgtccagttaaaaagaaagt 2056406  T

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Target: chr2 (Bit Score: 73; Significance: 4e-33; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 425 - 517
Target Start/End: Original strand, 28851104 - 28851196
Alignment:
Q  425 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttctctg 517  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |||||||||    
T  28851104 cttactttgaagcatccatgtcaggaatctgtccagagaacacgtttctttgagttgatggaacttccatattcgaatctttcgtcttctctg 28851196  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 513
Target Start/End: Complemental strand, 1389860 - 1389772
Alignment:
Q  425 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttc 513  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| ||||||||||||| ||||||||||||||    
T  1389860 cttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccatgagatgatggaacttccatattcaaatctttcttcttc 1389772  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 28847608 - 28847647
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  28847608 cccccaattcttcaacccttcttcttcatcttttcttctt 28847647  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 427
Target Start/End: Complemental strand, 1394643 - 1394607
Alignment:
Q  391 ccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  1394643 ccaactcttcaacccttcttcttcatctcttcttctt 1394607  T

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Target: chr5 (Bit Score: 69; Significance: 1e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 425 - 513
Target Start/End: Original strand, 8066913 - 8067001
Alignment:
Q  425 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattcgaatctttcttcttc 513  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||| ||||||||||||||||||||||||||||    
T  8066913 cttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccatgagataatggaacttccatattcgaatctttcttcttc 8067001  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 18876347 - 18876301
Alignment:
Q  182 agcgagtatcctcgaagttattacaagtgcacatatcctaattgtcc 228  Q
    ||||||| ||||||||||||||||||||||||  ||||||| |||||    
T  18876347 agcgagtttcctcgaagttattacaagtgcacgcatcctaactgtcc 18876301  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 391 - 427
Target Start/End: Original strand, 8062125 - 8062161
Alignment:
Q  391 ccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    |||| ||||||||||||||||||||||| ||||||||    
T  8062125 ccaactcttcaacccttcttcttcatctcttcttctt 8062161  T

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Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 425 - 498
Target Start/End: Original strand, 9180080 - 9180153
Alignment:
Q  425 cttactttgaagcatccatgtcggaaatctgtccagagaacacgtttccttgagttgatgtaacttccatattc 498  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  9180080 cttactttgaagcatccatgtcgggaatctgtccagagaacacgtttccttgagttgatggaacttccatattc 9180153  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 55986046 - 55986007
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  55986046 cccccaattcttcaacccttcttcttcatctgttcttctt 55986007  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 427
Target Start/End: Original strand, 55985056 - 55985095
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  55985056 cccccaattcttcaacccttcttcttcatatgttcttctt 55985095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 388 - 427
Target Start/End: Complemental strand, 38613193 - 38613154
Alignment:
Q  388 cccccaattcttcaacccttcttcttcatctgttcttctt 427  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  38613193 cccccaattcttcaatccttcttcttcatctgttcttctt 38613154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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