View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_29 (Length: 483)
Name: NF1305_low_29
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 82 - 321
Target Start/End: Complemental strand, 52876379 - 52876140
Alignment:
| Q |
82 |
ccacagagaatagcaacaccaccagtgagaaaatagaaatctctccaaacataggtaaattcacagtcttctgaccaaaattgggacgtttgctgctcat |
181 |
Q |
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| T |
52876379 |
ccacagagaatagcaacaccaccagtgagaaaatagaaatctctccaaacataggtaaattcacagtcttctgaccaaaattgggacgtttgctgctcat |
52876280 |
T |
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| Q |
182 |
aaatttgaaaaacaaatgaaaagttaacaagcacacaatatgaaaaaagaacaaatattttactttttatgagaagaaataagacatatgttatacctta |
281 |
Q |
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| T |
52876279 |
aaatttgaaaaacaaatgaaaagttaacaagcacacaatatgaaaaaagaacaaatattttactttttatgagaagaaataagacatatgttatacctta |
52876180 |
T |
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| Q |
282 |
aagtgagagttacgatacaattatgcatccccttgaaatg |
321 |
Q |
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| T |
52876179 |
aagtgagagttacaatacaattatgcatccccttgaaatg |
52876140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 390 - 446
Target Start/End: Complemental strand, 52876071 - 52876015
Alignment:
| Q |
390 |
ttgaattgactagtttcatatgatacattttttatagtaaagaaaaatctatccaac |
446 |
Q |
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| T |
52876071 |
ttgaattgactaatttcatatgatacattttttatagtaaagaaaaatctatccaac |
52876015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 159
Target Start/End: Original strand, 256424 - 256480
Alignment:
| Q |
103 |
ccagtgagaaaatagaaatctctccaaacataggtaaattcacagtcttctgaccaa |
159 |
Q |
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| T |
256424 |
ccagcgagaaaatagaaatctccccaaatagaggtacattcacggtcttttgaccaa |
256480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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