View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1305_low_34 (Length: 465)

Name: NF1305_low_34
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1305_low_34
NF1305_low_34
[»] chr6 (15 HSPs)
chr6 (23-456)||(1888047-1888493)
chr6 (23-366)||(1880751-1881090)
chr6 (23-119)||(1892895-1892991)
chr6 (247-383)||(1898833-1898969)
chr6 (198-367)||(1903989-1904158)
chr6 (198-367)||(1908222-1908391)
chr6 (194-366)||(1914098-1914270)
chr6 (32-119)||(1898233-1898320)
chr6 (32-120)||(1913608-1913696)
chr6 (250-365)||(1893124-1893239)
chr6 (32-118)||(1903533-1903619)
chr6 (32-118)||(1907766-1907852)
chr6 (358-403)||(1881369-1881414)
chr6 (401-447)||(1881428-1881474)
chr6 (229-349)||(1919119-1919239)


Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 23 - 456
Target Start/End: Original strand, 1888047 - 1888493
Alignment:
Q  23 atcatcagctgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatacatt 122  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888047 atcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatacatt 1888146  T
Q  123 tcaaaccatattgcttcactacgacaaaaaattttacacctcttatttatatacatttatttaatttttatagggaattttgggaaaattaatagggaat 222  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888147 tcaaaccatattgcttcactacgacaaaagattttacacctcttatttatatacatttatttaatttttatagggaattttgggaaaattaatagggaat 1888246  T
Q  223 atggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattcc 322  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1888247 atagtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattcc 1888346  T
Q  323 ttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattggattcttggcattgttcttgctaattt-------------ttaatgata 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             ||||||| |    
T  1888347 ttggtgatactcttcatgttggaaggtatagttaattcaatttttgaattggattcttggcattgttcttgctaatttttattgttccaacttaatgaca 1888446  T
Q  410 tggttgttgataatcattaatttgtgcatttctttctatagtataat 456  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||    
T  1888447 tggttgttgagaatcattaatttgtgcatttctttctatagtataat 1888493  T

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Target: chr6; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 23 - 366
Target Start/End: Original strand, 1880751 - 1881090
Alignment:
Q  23 atcatcagctgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatacatt 122  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||| |    
T  1880751 atcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctctatagtttcttctgtaagatacact 1880850  T
Q  123 tcaaacca-tattgcttcactacgacaaaaaattttacacctcttatttatatacatttatttaatttttatagggaattttgggaaaattaatagggaa 221  Q
    | |||  | |||||||  |||    |||| || |||||| |||||| ||  | |||||||| |     || ||||| ||||| |||||||||||| | |     
T  1880851 tgaaagtactattgctgtacttgaccaaataaatttacagctcttaatttgacacatttatat-----ttctaggggatttttggaaaattaataagcag 1880945  T
Q  222 tatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattc 321  Q
    ||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||  ||||||||||    
T  1880946 tatagtttatgcatggtcattgcgcttaaagggagctgtctatgtaacatcattcaagccactccaaattgtgttttctgttgccttggctgttatattc 1881045  T
Q  322 cttggtgatactcttcatgttggaaggtatagttaattcaatttt 366  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||    
T  1881046 cttggtgatactcttcatgttggaaggtatggtttattcaatttt 1881090  T

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Target: chr6; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 119
Target Start/End: Original strand, 1892895 - 1892991
Alignment:
Q  23 atcatcagctgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatac 119  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  1892895 atcaacagttgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttctgtaagatac 1892991  T

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Target: chr6; HSP #4
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 247 - 383
Target Start/End: Original strand, 1898833 - 1898969
Alignment:
Q  247 ttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaa 346  Q
    |||||||| || ||||||||||| |||||||||||||| |||||||||||||||| || |||  ||||||| || |||||||||||||||||||||||||    
T  1898833 ttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatttctgctggcttaggtgttatgtttcttggtgatactcttcatgttggaa 1898932  T
Q  347 ggtatagttaattcaatttttgaattggattcttggc 383  Q
    |||||||| ||||||||||||| ||| ||||||||||    
T  1898933 ggtatagtaaattcaatttttgcatttgattcttggc 1898969  T

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Target: chr6; HSP #5
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 198 - 367
Target Start/End: Original strand, 1903989 - 1904158
Alignment:
Q  198 aattttgggaaaattaatagggaatatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatt 297  Q
    |||||| ||||| || ||||| ||||  |||| ||| |||||  | || |||||||| || ||||||||||| |||||||||||||| ||||||||||||    
T  1903989 aattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatt 1904088  T
Q  298 tctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt 367  Q
    |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  1904089 tctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt 1904158  T

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Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 198 - 367
Target Start/End: Original strand, 1908222 - 1908391
Alignment:
Q  198 aattttgggaaaattaatagggaatatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatt 297  Q
    |||||| ||||| || ||||| ||||  |||| ||| |||||  | || |||||||| || ||||||||||| |||||||||||||| ||||||||||||    
T  1908222 aattttcggaaagttgataggcaatacagtttgtgcctggtctgttcggttaaagggggcagtctatgtaacctcattcaagccacttcaaattgttatt 1908321  T
Q  298 tctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaattttt 367  Q
    |||| || |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||||    
T  1908322 tctgctggcttgggtgttatattccttggtgatactcttcatgttggaaggtatggttatttgaattttt 1908391  T

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Target: chr6; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 194 - 366
Target Start/End: Original strand, 1914098 - 1914270
Alignment:
Q  194 agggaattttgggaaaattaatagggaatatggtttatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgt 293  Q
    |||||||||| || || ||||| || || || |||| ||| ||| |||| |  |||||||| |||||||||||||| |||||||||||||| ||||||||    
T  1914098 agggaattttcgggaagttaatcggtaacatagtttctgcctgggcaatacacttaaagggggctgtctatgtaacctcattcaagccactgcaaattgt 1914197  T
Q  294 tatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggtatagttaattcaatttt 366  Q
    ||| ||||||   ||| | ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  1914198 tatctctgtttggttgggagttatattccttggtgatactcttcatcttggaaggtatggttaattcaatttt 1914270  T

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Target: chr6; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 1898233 - 1898320
Alignment:
Q  32 tgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagatac 119  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||    
T  1898233 tgtagctttgttatcagttccaaatgcaagtgcttggaaaataggactgaatctctcacttatctccattgtttcttctgtaagatac 1898320  T

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Target: chr6; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 32 - 120
Target Start/End: Original strand, 1913608 - 1913696
Alignment:
Q  32 tgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagataca 120  Q
    |||||| |||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  1913608 tgtagctttgttatcagttccaaattcaagtgcttggataataggactaaatctctcacttatctccattgtttcttctgtaagataca 1913696  T

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Target: chr6; HSP #10
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 250 - 365
Target Start/End: Original strand, 1893124 - 1893239
Alignment:
Q  250 aagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtgatactcttcatgttggaaggt 349  Q
    ||||| |||||||||||||| ||||||||||| || ||||||||||||||||||| |||  | ||||||||||||||||||| ||||||| |||||||||    
T  1893124 aagggggctgtctatgtaacctcattcaagcctctacaaattgttatttctgttggcttaggagttatattccttggtgatattcttcatattggaaggt 1893223  T
Q  350 atagttaattcaattt 365  Q
    || ||||||| |||||    
T  1893224 atggttaatttaattt 1893239  T

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Target: chr6; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 1903533 - 1903619
Alignment:
Q  32 tgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagata 118  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||| |||||| ||| ||||||||    
T  1903533 tgtagctttgttatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagata 1903619  T

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Target: chr6; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 118
Target Start/End: Original strand, 1907766 - 1907852
Alignment:
Q  32 tgtagcattgttatcagttccaaatgcaagtgcttggaaaataggactaaatctctcactcatctccattgtttcttccgtaagata 118  Q
    |||||| ||||||||||||||||| ||||||||||||||||||||| | |||||||||||| ||||| |||||| ||| ||||||||    
T  1907766 tgtagctttgttatcagttccaaaagcaagtgcttggaaaataggattgaatctctcactcgtctccgttgtttgttctgtaagata 1907852  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 358 - 403
Target Start/End: Original strand, 1881369 - 1881414
Alignment:
Q  358 ttcaatttttgaattggattcttggcattgttcttgctaattttta 403  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||    
T  1881369 ttcaatatttgaattggatttttggcattgttcttgctaattttta 1881414  T

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Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 401 - 447
Target Start/End: Original strand, 1881428 - 1881474
Alignment:
Q  401 ttaatgatatggttgttgataatcattaatttgtgcatttctttcta 447  Q
    ||||| ||||||||||||| ||||||||||||||| |||||||||||    
T  1881428 ttaatcatatggttgttgacaatcattaatttgtgtatttctttcta 1881474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 229 - 349
Target Start/End: Original strand, 1919119 - 1919239
Alignment:
Q  229 tatgcatggtcaatgcgtttaaagggagctgtctatgtaacatcattcaagccactccaaattgttatttctgttgccttgagtgttatattccttggtg 328  Q
    ||||| ||| |||| | |||||||||  |||| |||| ||||   |||||||||||   |||||||||| |||||||  || || || | ||||||||||    
T  1919119 tatgcttgggcaatacatttaaagggtcctgtatatgcaacaatgttcaagccactttcaattgttattgctgttgctatgggtattttgttccttggtg 1919218  T
Q  329 atactcttcatgttggaaggt 349  Q
    ||||||||||| |||||||||    
T  1919219 atactcttcatattggaaggt 1919239  T

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