View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_38 (Length: 455)
Name: NF1305_low_38
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_38 |
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Alignment Details
Target: chr6 (Bit Score: 139; Significance: 1e-72; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 169 - 327
Target Start/End: Complemental strand, 25039884 - 25039726
Alignment:
| Q |
169 |
aaggtccgtgaactattttcagcttattttcatgatagcttatgaaaacatattatagcataacataaacagcttattataataacaacttatacataag |
268 |
Q |
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| T |
25039884 |
aaggtccgtaaactattttcagcttattttcatgatagcttatgaaaacatattatagcataacatgaacagcttattataataacaacttatacataag |
25039785 |
T |
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| Q |
269 |
tacttatactaaaacacttaaataagcagtctatccaaacaaggtctaagaaggtaaag |
327 |
Q |
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| T |
25039784 |
tacttatactaaaacacttaaataagtaggttatccaaacaaggtctaagaaggtaaag |
25039726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 353 - 455
Target Start/End: Complemental strand, 25039702 - 25039600
Alignment:
| Q |
353 |
aaccaaccttttccaggagacacattcaatttaacttctttctgatcatgagcaccaaagtcatgtccaccaaacacatcagagacaggtgaagcactag |
452 |
Q |
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| T |
25039702 |
aaccaaccttttccaggagacacattcaatttaacttctttctgatcatgagcaccaaagtcatgtccaccaaacacatcagagacaggtgaagcactag |
25039603 |
T |
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| Q |
453 |
aac |
455 |
Q |
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||| |
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| T |
25039602 |
aac |
25039600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 25040019 - 25039923
Alignment:
| Q |
71 |
ggcctcttaaaattcagttatttaaacttatctactgatataaacacttgtgatactgtttcggaaaacatataaagataaaaactattttcatatg |
167 |
Q |
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| T |
25040019 |
ggcctcttagaattcacttatttaaacttatctacttgtataaacacctgtgatactgtttcggaaaacatatgaagataaaaactattttcatatg |
25039923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 33385665 - 33385624
Alignment:
| Q |
90 |
atttaaacttatctactgatataaacacttgtgatactgttt |
131 |
Q |
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| T |
33385665 |
atttgaacttatctactgatataagcacttgtgaaactgttt |
33385624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 131
Target Start/End: Original strand, 11095427 - 11095470
Alignment:
| Q |
88 |
ttatttaaacttatctactgatataaacacttgtgatactgttt |
131 |
Q |
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| T |
11095427 |
ttatttaagcttatctactgacataaacacttgtgatattgttt |
11095470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Original strand, 19627568 - 19627609
Alignment:
| Q |
90 |
atttaaacttatctactgatataaacacttgtgatactgttt |
131 |
Q |
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|||| ||| |||||||| |||||||||||||||||||||||| |
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| T |
19627568 |
atttgaacctatctactaatataaacacttgtgatactgttt |
19627609 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 82 - 131
Target Start/End: Complemental strand, 43199979 - 43199930
Alignment:
| Q |
82 |
attcagttatttaaacttatctactgatataaacacttgtgatactgttt |
131 |
Q |
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| T |
43199979 |
attcatttatttgaacttatctactcatataagcacttgtgagactgttt |
43199930 |
T |
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