View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_39 (Length: 451)
Name: NF1305_low_39
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 282 - 439
Target Start/End: Complemental strand, 18228459 - 18228302
Alignment:
| Q |
282 |
taattataaagatagtgagtgatgtgggaatgtattgtctcatgttaaacttcctccggttttctccttgagcaatctcagccctctattccttttaata |
381 |
Q |
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| T |
18228459 |
taattataaagatagtgagtgatgtgggaatgtattgtctcatgttaaacttcctccagttttctccttgagcaatatcagccctctattccttttaata |
18228360 |
T |
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| Q |
382 |
cagatcaacggctaagaataaaaccaattaaaaattaacataaattttgtctatttca |
439 |
Q |
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| T |
18228359 |
cagatcaacgactaagaataaaaccaattaaaaattaacaaaaattttgtctatttca |
18228302 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 146 - 283
Target Start/End: Complemental strand, 18229028 - 18228880
Alignment:
| Q |
146 |
ggaggtacaatggtttgtgtttatgtgaaga---ggtttcataaag---------ttagaaagccacatacgaaaagggaaagttttgtgagccacaaat |
233 |
Q |
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| T |
18229028 |
ggaggtacaatggtttgtgtttatgtgaagaagaggtttcataaaggtcaaaaagttagaaagccacatacgaaaagggaaagttttgtgagccacaaat |
18228929 |
T |
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| Q |
234 |
tgttttggcctatgaaattcatacagttggcagtagaattcatgcacgta |
283 |
Q |
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| T |
18228928 |
t-ttttggcctatgagattcatacagttggcagtaggattcatgcacgta |
18228880 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 194 - 248
Target Start/End: Complemental strand, 18187327 - 18187273
Alignment:
| Q |
194 |
aagccacatacgaaaagggaaagttttgtgagccacaaattgttttggcctatga |
248 |
Q |
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| T |
18187327 |
aagccacatcagaaaagggaaagttttgtgagccacaaattgttttggcctatga |
18187273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 306 - 440
Target Start/End: Complemental strand, 1962650 - 1962514
Alignment:
| Q |
306 |
tgggaatgtattgtctcatgttaaacttcctccggttttctcctt--gagcaatctcagccctctattccttttaataca-gatcaacggctaagaataa |
402 |
Q |
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| T |
1962650 |
tgggaatggattgtctccagtcaaaatttctcctgttttctcctgtggagcaatcacagcccttcattccttttaatggaagatcaacggcttataataa |
1962551 |
T |
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| Q |
403 |
aaccaattaaaaattaacataaattttgtctatttcat |
440 |
Q |
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| T |
1962550 |
aatcaattaaaa-tcaacataaattctgtctatttcat |
1962514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 414
Target Start/End: Original strand, 1961987 - 1962097
Alignment:
| Q |
307 |
gggaatgtattgtctcatgttaaacttcctccggttttctcctt--gagcaatctcagccctctattccttttaata-cagatcaacggctaagaataaa |
403 |
Q |
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| T |
1961987 |
gggaatggattgtctccagtcaaaatttctccagttttctcctgtggagcaatcatagccctccattccttttaatggcagatcaacggcttataataaa |
1962086 |
T |
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| Q |
404 |
accaattaaaa |
414 |
Q |
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| T |
1962087 |
accaattaaaa |
1962097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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