View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_4 (Length: 707)
Name: NF1305_low_4
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 564; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 11 - 678
Target Start/End: Original strand, 22741517 - 22742184
Alignment:
| Q |
11 |
cataggtgatcgaaaaggaaagttagacgacacagttgagccaaaaggacaacttgttcaagatgaagaacgagaaaagggtagagttgagtttaaagtt |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22741517 |
cataggtgatcgaaaaggaaagttagatgacacagttaagccaaaaggacaacttgttcaagatgaagaacgagaaaagggtagagttgagtttaaagtg |
22741616 |
T |
|
| Q |
111 |
ttccgaaaatacatcacaactggttatggaggagctctggtacctattatatttctttcacaaatactcacagtggttttacagattgcaagcaattatt |
210 |
Q |
| |
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||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22741617 |
ttctggaaatacatcacaacaggttatggaggagctctggtacctattatatttctttcacaaatactcactgtggttttacagattgcaagcaattatt |
22741716 |
T |
|
| Q |
211 |
ggatggctttggcaactcctgtttcagcaactgcggaacctgatattggaaatcttactcttatggttgtctatgtgtctttggcagttggaatttcctt |
310 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
22741717 |
ggatggctttggcaactcctgtttcagcaaccgcagaacctgaaattggaaatcttactcttatggttgtctatgtttctttggcggttggaatttcctt |
22741816 |
T |
|
| Q |
311 |
ttccacccttgctagagcaggttttgttgtgatagctggatacaaggccgccacaatgctcttcaatcaaatgcatttgagctttattcgagcaccaatg |
410 |
Q |
| |
|
| ||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||| |
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| T |
22741817 |
taccacctttgctagagcaggtcttgttgtgatagctggatacaaagccgccacaatgctcttcaatcaaatgcatttgagctttattagagcaccgatg |
22741916 |
T |
|
| Q |
411 |
tcgttttttgatgccacaccaagtggacgaattcttaatagagtatgtcacaacacattgataattctttactggtttattttgaaaagacaaattgttt |
510 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22741917 |
tcgttttttgatgcgacaccaagtggacgaattcttaatagagtatgtcacaacacattgataattctttactggtttattttgaaaagacaaattgttt |
22742016 |
T |
|
| Q |
511 |
atctcatcacggcagaaacataatcactgcagtaaatgcatgacatagttactgatctcgaccatgcgatttaaatcaatggttgagattgtctaaaatt |
610 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| |
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| T |
22742017 |
ttctcatcacggcagaaacataatcactgcagtaaatgcatgacatagttactgatcttgaccatgcgatttaaatcaacggttgagattgtttaaaatt |
22742116 |
T |
|
| Q |
611 |
gatgttgtgaatgtgtaacctgagctgtctgatctcaaacaaatgacggatattgattctggtgtgaa |
678 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||| |||||||| |
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|
| T |
22742117 |
gatgttgtgaatgtgtaacctgagctgtctgatctcaaacaaatgaccgctattgattccggtgtgaa |
22742184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 265; E-Value: 1e-147
Query Start/End: Original strand, 54 - 458
Target Start/End: Complemental strand, 22669596 - 22669192
Alignment:
| Q |
54 |
aaaggacaacttgttcaagatgaagaacgagaaaagggtagagttgagtttaaagttttccgaaaatacatcacaactggttatggaggagctctggtac |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| | ||||||||||||||| |||| |
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|
| T |
22669596 |
aaaggacaacttgttcaagatgaagaacgagaaaagggtagagttgagtttaaagtgttcttgaaatacatcacaacagcttatggaggagctcttgtac |
22669497 |
T |
|
| Q |
154 |
ctattatatttctttcacaaatactcacagtggttttacagattgcaagcaattattggatggctttggcaactcctgtttcagcaactgcggaacctga |
253 |
Q |
| |
|
|| || |||| |||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||| |
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| T |
22669496 |
cttttttattgctttcacagatactcactgtgggtttacagattgcaagcaatttttggatggctttggcaactcctgtttcggcaactgcagaacctga |
22669397 |
T |
|
| Q |
254 |
tattggaaatcttactcttatggttgtctatgtgtctttggcagttggaatttccttttccacccttgctagagcaggttttgttgtgatagctggatac |
353 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||| ||||||||| |||||| ||| ||| ||||||||| ||||||| | ||| || ||||||||||||| |
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|
| T |
22669396 |
tattggaagccttactcttatggctgtctatgtttctttggcaattggaagttcgtttgccacccttggcagagcagttcttgctgcgatagctggatac |
22669297 |
T |
|
| Q |
354 |
aaggccgccacaatgctcttcaatcaaatgcatttgagctttattcgagcaccaatgtcgttttttgatgccacaccaagtggacgaattcttaatagag |
453 |
Q |
| |
|
||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |
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|
| T |
22669296 |
aagacctccacaattctcttcaatcaaatgcatttgagctttattcgagcaccaatgtcgtttttcgatgccacaccaagtggaagaattcttaatagag |
22669197 |
T |
|
| Q |
454 |
tatgt |
458 |
Q |
| |
|
||||| |
|
|
| T |
22669196 |
tatgt |
22669192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 12 - 458
Target Start/End: Complemental strand, 22726277 - 22725831
Alignment:
| Q |
12 |
ataggtgatcgaaaaggaaagttagacgacacagttgagccaaaaggacaacttgttcaagatgaagaacgagaaaagggtagagttgagtttaaagttt |
111 |
Q |
| |
|
|||| ||||| ||||||||| ||| ||| |||| ||| ||||||||||||||||||||| ||||||||||||||||| ||||||| ||||||||| | |
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|
| T |
22726277 |
atagatgatcaaaaaggaaaattacacggcacatctgacggaaaaggacaacttgttcaagacgaagaacgagaaaagggcagagttgggtttaaagtgt |
22726178 |
T |
|
| Q |
112 |
tccgaaaatacatcacaactggttatggaggagctctggtacctattatatttctttcacaaatactcacagtggttttacagattgcaagcaattattg |
211 |
Q |
| |
|
|| |||||||||||||| | ||||||||||||||| |||||| || |||| |||||||| |||||||| |||| |||||||||||||||||||| ||| |
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|
| T |
22726177 |
tcttgaaatacatcacaacagcttatggaggagctcttgtaccttttttattgctttcacagatactcactgtgggtttacagattgcaagcaatttttg |
22726078 |
T |
|
| Q |
212 |
gatggctttggcaactcctgtttcagcaactgcggaacctgatattggaaatcttactcttatggttgtctatgtgtctttggcagttggaatttccttt |
311 |
Q |
| |
|
||||| |||||||||||||||||| |||||||| |||||||||||||||| ||||||||||||| ||||||||| ||||||||| |||||| ||| ||| |
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|
| T |
22726077 |
gatggttttggcaactcctgtttcggcaactgcagaacctgatattggaagccttactcttatggctgtctatgtttctttggcaattggaagttcgttt |
22725978 |
T |
|
| Q |
312 |
tccacccttgctagagcaggttttgttgtgatagctggatacaaggccgccacaatgctcttcaatcaaatgcatttgagctttattcgagcaccaatgt |
411 |
Q |
| |
|
|||||||||| ||| ||| | ||| ||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22725977 |
gccacccttgccagatcagttcttgctgtcatagctggatacaagacctccacaatgctcttcaatcaaatgcatttgagctttattcgagcaccaatgt |
22725878 |
T |
|
| Q |
412 |
cgttttttgatgccacaccaagtggacgaattcttaatagagtatgt |
458 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
22725877 |
cgtttttcgatgccacaccaagtggaagaattcttaacagagtatgt |
22725831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 405 - 458
Target Start/End: Complemental strand, 22749225 - 22749172
Alignment:
| Q |
405 |
ccaatgtcgttttttgatgccacaccaagtggacgaattcttaatagagtatgt |
458 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||| |||| |||||||| |||||| |
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|
| T |
22749225 |
ccaatgtctttttttgatgccactccaagtggaagaatccttaatagggtatgt |
22749172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 85
Target Start/End: Complemental strand, 22749584 - 22749545
Alignment:
| Q |
46 |
ttgagccaaaaggacaacttgttcaagatgaagaacgaga |
85 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
22749584 |
ttgagccaaaaggacaacttgttcaagaagaagaaagaga |
22749545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 369 - 462
Target Start/End: Complemental strand, 41450332 - 41450239
Alignment:
| Q |
369 |
ctcttcaatcaaatgcatttgagctttattcgagcaccaatgtcgttttttgatgccacaccaagtggacgaattcttaatagagtatgtcaca |
462 |
Q |
| |
|
||||||||| ||||||| ||| || || | || || || ||||||||||||||| | || |||||||| ||||| ||||||||||||||||||| |
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|
| T |
41450332 |
ctcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtcaca |
41450239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 41437106 - 41437015
Alignment:
| Q |
369 |
ctcttcaatcaaatgcatttgagctttattcgagcaccaatgtcgttttttgatgccacaccaagtggacgaattcttaatagagtatgtca |
460 |
Q |
| |
|
||||||||| ||||||| ||| || || | || || || ||||||||||||||| | || |||||||| ||||| ||||||||||||||||| |
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|
| T |
41437106 |
ctcttcaataaaatgcacttgtgcattttccgtgccccgatgtcgttttttgattctactccaagtggtcgaatccttaatagagtatgtca |
41437015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 539 - 628
Target Start/End: Complemental strand, 43499755 - 43499666
Alignment:
| Q |
539 |
gcagtaaatgcatgacatagttactgatctcgaccatgcgatttaaatcaatggttgagattgtctaaaattgatgttgtgaatgtgtaa |
628 |
Q |
| |
|
||||||| ||| ||||| | ||||||||||| ||||| |||||||||||| |||||||||| | |||||||| | | | |||||||||| |
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| T |
43499755 |
gcagtaactgcgtgacaaatttactgatctcaaccatccgatttaaatcactggttgagatgatttaaaattgctttagcgaatgtgtaa |
43499666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 369 - 460
Target Start/End: Complemental strand, 14239257 - 14239166
Alignment:
| Q |
369 |
ctcttcaatcaaatgcatttgagctttattcgagcaccaatgtcgttttttgatgccacaccaagtggacgaattcttaatagagtatgtca |
460 |
Q |
| |
|
||||||||| ||||||| ||| || || | || || || ||||| ||||||||| | || |||||||||||||| || |||||||||||||| |
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|
| T |
14239257 |
ctcttcaataaaatgcacttgtgcattttccgtgccccgatgtcattttttgattctactccaagtggacgaatcctcaatagagtatgtca |
14239166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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