View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_40 (Length: 445)
Name: NF1305_low_40
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_40 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 259 - 417
Target Start/End: Complemental strand, 44594658 - 44594503
Alignment:
| Q |
259 |
cctttgaaactttgtattgagtctcatcttgttattgccttcttttgatcggagtaatgggcataccctgccgttgttcccacacctcccaatcccacat |
358 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44594658 |
cctttgaaactttgtattgagtctcatcttgtt---gccttcttttgatcggagtaatgggcataccctgccgttgttcccacacctcccaatcccacat |
44594562 |
T |
|
| Q |
359 |
cactgaaatcatcatcaccagtttcttccgccataagtcttagatctttaatcattcat |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44594561 |
cactgaaatcatcatcaccagtttcttccgccataagtcttagatctttaatcattcat |
44594503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 32 - 200
Target Start/End: Complemental strand, 44594887 - 44594719
Alignment:
| Q |
32 |
tcagaaactaaggttggtgaggaaaccaagcaaagcatcaaaattacataacatagtaataattaacaaaaaggcatcaaagcaagtaaacaatcttcca |
131 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
44594887 |
tcagaaactaaggttggtgaggaaaccaagcaaaccatcaaaattacataacatagtaataattaacaaaaaggcatcaaagcaagtaaacaatcttcta |
44594788 |
T |
|
| Q |
132 |
atataaacccaacatagtccatttttctcatagnnnnnnntctaagagagaaagaaacatagccactag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
44594787 |
atataaacccaacatagtccatttttctcatagaaaaaaaatcaagagagaaagaaacatagccactag |
44594719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University