View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_41 (Length: 444)
Name: NF1305_low_41
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 4e-76; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 258 - 416
Target Start/End: Complemental strand, 44594658 - 44594503
Alignment:
| Q |
258 |
cctttgaaactttgtattgagtctcatcttgttattgccttcttttgatcggagtaatgggcataccctgccgttgttcccacacctcccaatcccacat |
357 |
Q |
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| T |
44594658 |
cctttgaaactttgtattgagtctcatcttgtt---gccttcttttgatcggagtaatgggcataccctgccgttgttcccacacctcccaatcccacat |
44594562 |
T |
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| Q |
358 |
cactgaaatcatcatcaccagtttcttccgccataagtcttagatctttaatcattcat |
416 |
Q |
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| T |
44594561 |
cactgaaatcatcatcaccagtttcttccgccataagtcttagatctttaatcattcat |
44594503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 31 - 199
Target Start/End: Complemental strand, 44594887 - 44594719
Alignment:
| Q |
31 |
tcagaaactaaggttggtgaggaaaccaagcaaagcatcaaaattacataacatagtaataattaacaaaaaggcatcaaagcaagtaaacaatcttcca |
130 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
44594887 |
tcagaaactaaggttggtgaggaaaccaagcaaaccatcaaaattacataacatagtaataattaacaaaaaggcatcaaagcaagtaaacaatcttcta |
44594788 |
T |
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| Q |
131 |
atataaacccaacatagtccatttttctcatagnnnnnnntctaagagagaaagaaacatagccactag |
199 |
Q |
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| T |
44594787 |
atataaacccaacatagtccatttttctcatagaaaaaaaatcaagagagaaagaaacatagccactag |
44594719 |
T |
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