View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1305_low_44 (Length: 437)
Name: NF1305_low_44
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_44 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 361; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Original strand, 1248845 - 1249229
Alignment:
| Q |
16 |
atcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacc |
115 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
1248845 |
atcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctaccatacc |
1248944 |
T |
|
| Q |
116 |
tggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1248945 |
tggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaa |
1249044 |
T |
|
| Q |
216 |
cagcctaaccggtcctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttac |
315 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1249045 |
cagcctaaccggtcctatccctgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcgggttccggcttac |
1249144 |
T |
|
| Q |
316 |
ctcggccaccttcctaagcttgtaggcctagatgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgc |
400 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1249145 |
ctcggccgccttcctaagcttgtaggcctagatgtgagccacaaccagctttgtggtcctataccaaaggatggagggaagttgc |
1249229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 12079781 - 12079465
Alignment:
| Q |
16 |
atcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacc |
115 |
Q |
| |
|
||||||||||| || ||| | |||||||||||||| ||||| || ||||||||||| || |||||||| ||||| |||||||| || || ||||| |||| |
|
|
| T |
12079781 |
atcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctaccttacc |
12079682 |
T |
|
| Q |
116 |
tggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaa |
215 |
Q |
| |
|
| ||||||||||| || ||| ||| |||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
12079681 |
tcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaa |
12079582 |
T |
|
| Q |
216 |
cagcctaaccggtcctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttac |
315 |
Q |
| |
|
|| |||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
12079581 |
caacctaactggtcctatccctgattactttagcaaactaaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattccagcttac |
12079482 |
T |
|
| Q |
316 |
ctcggccaccttcctaa |
332 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
12079481 |
ctcggccgccttcctaa |
12079465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 16 - 332
Target Start/End: Complemental strand, 12096421 - 12096105
Alignment:
| Q |
16 |
atcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctaccatacc |
115 |
Q |
| |
|
||||||||||| || ||| | |||||||||||||| ||||| || || |||||||| || |||||||| || || |||||||| || || ||||| |||| |
|
|
| T |
12096421 |
atcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctaccttacc |
12096322 |
T |
|
| Q |
116 |
tggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaactggaa |
215 |
Q |
| |
|
| ||||||||||| || ||| |||||||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| ||||| |
|
|
| T |
12096321 |
tcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaattggaa |
12096222 |
T |
|
| Q |
216 |
cagcctaaccggtcctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccggcttac |
315 |
Q |
| |
|
|| |||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| |||| |||||| |
|
|
| T |
12096221 |
caacctaactggtcctatccctgattactttagcaaacttaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcctgcttac |
12096122 |
T |
|
| Q |
316 |
ctcggccaccttcctaa |
332 |
Q |
| |
|
||||||| ||||||||| |
|
|
| T |
12096121 |
ctcggccgccttcctaa |
12096105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University