View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_45 (Length: 437)
Name: NF1305_low_45
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_45 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 10 - 400
Target Start/End: Original strand, 1248839 - 1249229
Alignment:
| Q |
10 |
aagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctac |
109 |
Q |
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||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1248839 |
aagaaaatcccaaaaacaacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatccccccactcattgctgacctac |
1248938 |
T |
|
| Q |
110 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1248939 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
1249038 |
T |
|
| Q |
210 |
ctggaacagcctaaccggtcctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccg |
309 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1249039 |
ctggaacagcctaaccggtcctatccctgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcgggttccg |
1249138 |
T |
|
| Q |
310 |
gcttacctcggccaccttcctaagcttgtaggcctagatgtaagccacaaccagctttgtggtcctataccaaaggatggagggaagttgc |
400 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1249139 |
gcttacctcggccgccttcctaagcttgtaggcctagatgtgagccacaaccagctttgtggtcctataccaaaggatggagggaagttgc |
1249229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 12079787 - 12079465
Alignment:
| Q |
10 |
aagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctac |
109 |
Q |
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||||| ||||||||||| || ||| | |||||||||||||| ||||| || ||||||||||| || |||||||| ||||| |||||||| || || |||| |
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| T |
12079787 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggtgctgatgatcttgtcggtacaataccgccactcatcgccgatctac |
12079688 |
T |
|
| Q |
110 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
209 |
Q |
| |
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| ||||| ||||||||||| || ||| ||| |||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| |
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| T |
12079687 |
cttacctcgagaccctcattttacgcctcctacctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12079588 |
T |
|
| Q |
210 |
ctggaacagcctaaccggtcctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccg |
309 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
12079587 |
ttggaacaacctaactggtcctatccctgattactttagcaaactaaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcca |
12079488 |
T |
|
| Q |
310 |
gcttacctcggccaccttcctaa |
332 |
Q |
| |
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||||||||||||| ||||||||| |
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|
| T |
12079487 |
gcttacctcggccgccttcctaa |
12079465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 10 - 332
Target Start/End: Complemental strand, 12096427 - 12096105
Alignment:
| Q |
10 |
aagaatatcccaaaaaccacaatctaccgtgtcaacttcctcgagatcgacggtgctgatgacctcgtcggtacgatacccccactcattgctgacctac |
109 |
Q |
| |
|
||||| ||||||||||| || ||| | |||||||||||||| ||||| || || |||||||| || |||||||| || || |||||||| || || |||| |
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| T |
12096427 |
aagaaaatcccaaaaacaaccatccatcgtgtcaacttccttgagatagatggcgctgatgatcttgtcggtacaatcccgccactcatcgccgatctac |
12096328 |
T |
|
| Q |
110 |
catacctggagaccctcatattccgcaacctccctaacctcaccggtcctatccctcaagccattgcgaaacttcctcaccttaactttgtcctccttaa |
209 |
Q |
| |
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| ||||| ||||||||||| || ||| |||||||||||| || |||||||| |||||||||||||| | ||| ||||||||||| |||||||||||||| |
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| T |
12096327 |
cttacctcgagaccctcatttttcgcctcctccctaacctaacaggtcctattcctcaagccattgcaagactgcctcaccttaaatttgtcctccttaa |
12096228 |
T |
|
| Q |
210 |
ctggaacagcctaaccggtcctatccccgattactttagcaagctcaccaatttagccactttagggcttaataacaaccatttaaccggtcaggttccg |
309 |
Q |
| |
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||||||| |||||| ||||||||||| |||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||| |||| |
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| T |
12096227 |
ttggaacaacctaactggtcctatccctgattactttagcaaacttaccaatttagccaccttagggcttaataacaaccaattaaccggtccaattcct |
12096128 |
T |
|
| Q |
310 |
gcttacctcggccaccttcctaa |
332 |
Q |
| |
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||||||||||||| ||||||||| |
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|
| T |
12096127 |
gcttacctcggccgccttcctaa |
12096105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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