View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_49 (Length: 430)
Name: NF1305_low_49
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_49 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 118 - 320
Target Start/End: Complemental strand, 49218373 - 49218170
Alignment:
| Q |
118 |
agcacacaaatcacgcacctggaaaacgtgaaagaagtaaaaggatgaatgaaaatggaaatggaaggtgtagcatgcatgatatgatgatataggtaaa |
217 |
Q |
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| T |
49218373 |
agcacacaaatcacgcacctggaaaacgtgaaagaagtaaaagggtgaatgaaaatggaaatggaaggtgtagcatgcatgatatgatgatataggtaaa |
49218274 |
T |
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| Q |
218 |
atggaaattag-aaattggaacctgaagaagtgaagcgattttgaagttgatatcttcagggagggagatgaagaatgaactagaatctgtcatatcttt |
316 |
Q |
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| T |
49218273 |
atggaaattagaaaattggaacctgaagaagtgaagcgattttgaagttgatatcttcagggagggagatgaagaatgaactagaatctgccatatcttt |
49218174 |
T |
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| Q |
317 |
ggat |
320 |
Q |
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|||| |
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| T |
49218173 |
ggat |
49218170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 342 - 376
Target Start/End: Complemental strand, 49218157 - 49218123
Alignment:
| Q |
342 |
cagtttgtataaccataaggatcaggtgtacctgt |
376 |
Q |
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| T |
49218157 |
cagtttgtataaccataaggatcaggtgtacctgt |
49218123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 229 - 301
Target Start/End: Original strand, 45159444 - 45159516
Alignment:
| Q |
229 |
aaattggaacctgaagaagtgaagcgattttgaagttgatatcttcagggagggagatgaagaatgaactaga |
301 |
Q |
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| T |
45159444 |
aaattggaacaagaagaagtgaagcgattttgttgttgatatcttcagcaagggagatgaagaatgaaataga |
45159516 |
T |
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