View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_5 (Length: 702)
Name: NF1305_low_5
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 45 - 391
Target Start/End: Original strand, 42037599 - 42037940
Alignment:
| Q |
45 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagagnnnnnnnnnntattcactcacgggtttta |
144 |
Q |
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| T |
42037599 |
caaggaatctgcatcataaaccaacatcattgcaaagagaaacacctcaaaaagagtaaattaagaaagaaagaaaa-----aatcactcacgggtttta |
42037693 |
T |
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| Q |
145 |
agagttttgttaactcttgtacttttctcttccaattttcaataatatttctttgtttgccattnnnnnnnntacacatcagtattgataatataataag |
244 |
Q |
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| T |
42037694 |
agagttttgttaactcttgtacttttctcctccaattttcaataatatttctttgtttgccattaaaaaaaatacacatcagtattgataatataataag |
42037793 |
T |
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| Q |
245 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactannnnnnnatggcaaagataaatatattaacaaaataaagaggttgtgcaaga |
344 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037794 |
cataagtatttacaatttcttaaggtgcatcatgttcatactttactatttttttatggcaaagataaatatattaacaaaataaagaggttgtgcaaga |
42037893 |
T |
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| Q |
345 |
gtgctacaaaacaaacagaaaatagcagcctgagccccaggggtacc |
391 |
Q |
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| T |
42037894 |
gtgctacaaaacaaacagaaagtagcagcctgagccccaggggtacc |
42037940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 460 - 673
Target Start/End: Original strand, 42038009 - 42038222
Alignment:
| Q |
460 |
tcccaaaaacctgagaataacctccaaaaccagactactcgtcggaagttgcccattccctaggggaacagggagagggaccaaacctaatgggctgtcg |
559 |
Q |
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||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42038009 |
tcccaaaaacctgagaataacctacaaaaccagactacccgtcggaagttgcccattccctaggggaacagggagagggaccaaacctaatgggctgtcg |
42038108 |
T |
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| Q |
560 |
agaattggaagacaaaccacccaagcccgctgagaccccaacacagacactcacacaagattctacggttccaactcatggctggatgtgtctcccactc |
659 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
42038109 |
aggattggaagacaaaccacccaagcccgctgagaccccaacacagacactcacacaagattctacggttccaactcacggctggatgtgtctcccactc |
42038208 |
T |
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| Q |
660 |
atagaagaagtatg |
673 |
Q |
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|||||||||||||| |
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| T |
42038209 |
atagaagaagtatg |
42038222 |
T |
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