View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1305_low_50 (Length: 425)
Name: NF1305_low_50
Description: NF1305
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1305_low_50 |
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Alignment Details
Target: chr5 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 30 - 415
Target Start/End: Complemental strand, 5365912 - 5365527
Alignment:
| Q |
30 |
cgaagccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagtt |
129 |
Q |
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| T |
5365912 |
cgaagccggtacccgaaccttccgaaccctagcttcagcatcagaaaaaacttgctctttcgaatcaacaagaaaaacggttctaaaattccaagaagtt |
5365813 |
T |
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| Q |
130 |
agtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaacactt |
229 |
Q |
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| T |
5365812 |
agtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgatattagtaacactt |
5365713 |
T |
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| Q |
230 |
attgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttctgt |
329 |
Q |
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| T |
5365712 |
attgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgctggtggttctgt |
5365613 |
T |
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| Q |
330 |
tcaaaaagttatgaaggaaattggtgctagaatggaaaaattcgcaagactcatgggagttccatttaaattcaacgttattcatc |
415 |
Q |
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| T |
5365612 |
tcaaaaagttatgaaggaaattggtgctagaatggaaaaattcgctagactcatgggagttccatttaaattcaacgttattcatc |
5365527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 118 - 404
Target Start/End: Original strand, 39987510 - 39987802
Alignment:
| Q |
118 |
ttccaagaagttagtccgtggacaaccttcggccatgtcgcatgcaatggcgccattttagaagccttcgaaggtgattccaagctgcacataattgata |
217 |
Q |
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| T |
39987510 |
ttccaagaagttagtccatggacaacgtttggacacgtggcagctaacggtgctatcttagaagcattggaaggtaaccctaaacttcacataattgata |
39987609 |
T |
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| Q |
218 |
ttagtaacacttattgcactcagtggccaactctttttgaagcgttggccactcgtgctgacgatactcctcacctccgtctaactaccatcgtcactgc |
317 |
Q |
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|||| ||||||||||||||||| |||||||| || | |||||||||||||| || |||| ||||| |||||||| ||| |||| || | |||||||| |
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| T |
39987610 |
ttagcaacacttattgcactcaatggccaacactcctcgaagcgttggccacccgctctgatgatacgcctcaccttcgtttaaccactgtagtcactgc |
39987709 |
T |
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| Q |
318 |
------tggtggttctgttcaaaaagttatgaaggaaattggtgctagaatggaaaaattcgcaagactcatgggagttccatttaaattcaa |
404 |
Q |
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| T |
39987710 |
aatcagcggtggctcggtgcaaaaagtcatgaaggaaattggttcaaggatggaaaaatttgctaggcttatgggagtgccgtttaaattcaa |
39987802 |
T |
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